RNA id: TU59914


Basic Information

Item Value
RNA id TU59914
length 330
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G52593
representative True

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 3222632 ~ 3222961 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTTTAATAGGTTTTAAAAGTAACCAAAATGCTAAACATTAAAATTAAAGCAGAACAAACATGAACGGAAATGTTTGATACAAGCTTGTTCAGTTTGGTTATGACCTGATGTCACTTTTATATTTTTAAGCTCTAGGAAATATGAATGTGAAGTGAATTTGTGGTCTCGTTGATAGAAGATTTTGGCCATATTGCCCATCCAAGTCATTCATTCCGGTATGGCAGGCTCGTCAGTAGGCTACACTTCTTGTATTTCGGGCACACCACAAGGTGTCACTGTGGCCTCAATGCTTCGTCCTCGCCTACTCTGAGCTCGATTGCTATGTCTGAG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU59839 lncRNA downstream 690 3220732 ~ 3221942 (-) True G52521
TU59805 lncRNA downstream 15206 3202765 ~ 3207426 (-) True G52496
TU59800 lncRNA downstream 66486 3150263 ~ 3156146 (-) True G52494
TU59910 lncRNA downstream 73200 3147928 ~ 3149432 (-) True G52589
TU59836 lncRNA downstream 140195 3081991 ~ 3082437 (-) True G52518
TU59913 lncRNA upstream 529 3223490 ~ 3223799 (-) True G52592
TU59831 lncRNA upstream 55783 3278744 ~ 3279333 (-) True G52513
TU59811 lncRNA upstream 64357 3287318 ~ 3290823 (-) False G52501
TU59812 lncRNA upstream 64357 3287318 ~ 3287926 (-) True G52501
TU59928 lncRNA upstream 77988 3300949 ~ 3302661 (-) True G52606
CI01000009_03171440_03194494.mRNA mRNA downstream 27487 3171440 ~ 3195145 (-) True CI01000009_03171440_03194494
CI01000009_03140599_03143635.mRNA mRNA downstream 78997 3140599 ~ 3143635 (-) True CI01000009_03140599_03143635
CI01000009_03009238_03025860.mRNA mRNA downstream 196695 3008360 ~ 3025937 (-) False CI01000009_03009238_03025860
CI01000009_03006152_03007243.mRNA mRNA downstream 214777 3005386 ~ 3007855 (-) False CI01000009_03006152_03007243
CI01000009_02975388_02982670.mRNA mRNA downstream 237241 2975388 ~ 2985391 (-) False CI01000009_02975388_02982670
CI01000009_03226613_03234223.mRNA mRNA upstream 2807 3225768 ~ 3234223 (-) True CI01000009_03226613_03234223
CI01000009_03235111_03242103.mRNA mRNA upstream 12053 3235014 ~ 3242103 (-) True CI01000009_03235111_03242103
CI01000009_03244366_03259106.mRNA mRNA upstream 20637 3243598 ~ 3259106 (-) True CI01000009_03244366_03259106
CI01000009_03261739_03262843.mRNA mRNA upstream 38077 3261038 ~ 3262843 (-) False CI01000009_03261739_03262843
CI01000009_03264437_03267242.mRNA mRNA upstream 41476 3264437 ~ 3267242 (-) True CI01000009_03264437_03267242
TU59711 other downstream 323225 2899254 ~ 2899407 (-) True G52415
TU59706 other downstream 660099 2551724 ~ 2562533 (-) True G52410
TU59630 other downstream 981868 2240693 ~ 2240764 (-) True CI01000009_02239426_02240738
TU59814 other upstream 38242 3261203 ~ 3261957 (-) True CI01000009_03261739_03262843
TU60172 other upstream 994459 4217420 ~ 4231469 (-) True G52828
TU60944 other upstream 2279434 5502395 ~ 5505248 (-) False G53515
TU63500 other upstream 5202860 8425821 ~ 8428012 (-) True G55814
TU64878 other upstream 5635191 8858152 ~ 8860563 (-) True CI01000009_08858198_08860555

Expression Profile