RNA id: TU58775


Basic Information

Item Value
RNA id TU58775
length 489
lncRNA type antisense_over
GC content 0.42
exon number 2
gene id G51585
representative True

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 3262336 ~ 3262959 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GCGATCTCTGAGGTCATCACGGCTACCTTTGCGGTCATCGTAGCGATCTCTGAGGTCATCACGGCTACCTTTGCGGTCATCGTAGCGATCTCTGAGGTCATCACGGCTACCTTTGCGGTCATCGAAGCGATCTCTGAGGTCATCACGGTCACCTCCACTGTCATCACTTCGAGCTTTGTCAGTTCTCTCTTCAGTGTTGTATGTATTCCCTACGTCAATATATTCTATTTGTGGTTCGTCGTGGTATTCCACCACTGGAACTTTTTTGATTTCTGTTTCCGTTTGCGGCAACAGCAGATGATGATTATTATGAGCACTGTAGCTCCAGCAATACAACCAGCAACAATGCCTATTGTGGCAAGATTCATAGAGGCTATAAAAACAGAAAGACATGGAAATTAAAAATCAGCACATTAAGCAGGTCAATATTTCACACATTAATCTCAGTAAATTACCATATAATTGTAATGTAATAAACACTTAATTGCT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU58771 lncRNA upstream 327 3261197 ~ 3262009 (+) True G51581
TU58779 lncRNA upstream 38471 3222759 ~ 3223865 (+) True G51589
TU58773 lncRNA upstream 40039 3221013 ~ 3222297 (+) True CI01000009_03211734_03220047
TU58800 lncRNA upstream 112904 3119464 ~ 3149432 (+) True G51610
TU58740 lncRNA upstream 143316 3118793 ~ 3119020 (+) True G51559
TU58759 lncRNA downstream 24369 3287328 ~ 3290810 (+) True G51569
TU58827 lncRNA downstream 45567 3308526 ~ 3308759 (+) True G51637
TU58828 lncRNA downstream 46119 3309078 ~ 3309537 (+) True G51638
TU58829 lncRNA downstream 47995 3310954 ~ 3311469 (+) True G51639
TU58849 lncRNA downstream 164607 3427566 ~ 3427773 (+) True G51659
CI01000009_03211734_03220047.mRNA mRNA upstream 41029 3211734 ~ 3221307 (+) False CI01000009_03211734_03220047
CI01000009_03202999_03207060.mRNA mRNA upstream 54908 3202207 ~ 3207428 (+) False CI01000009_03202999_03207060
CI01000009_03164135_03169470.mRNA mRNA upstream 92196 3162318 ~ 3170140 (+) True CI01000009_03164135_03169470
CI01000009_03145417_03159851.mRNA mRNA upstream 102422 3145417 ~ 3159914 (+) True CI01000009_03145417_03159851
CI01000009_03123137_03137452.mRNA mRNA upstream 124025 3122116 ~ 3138311 (+) True CI01000009_03123137_03137452
CI01000009_03276572_03283625.mRNA mRNA downstream 13613 3276572 ~ 3284006 (+) True CI01000009_03276572_03283625
CI01000009_03301176_03305406.mRNA mRNA downstream 38217 3301176 ~ 3305595 (+) True CI01000009_03301176_03305406
CI01000009_03313112_03329470.mRNA mRNA downstream 50153 3313112 ~ 3329510 (+) True CI01000009_03313112_03329470
CI01000009_03330968_03333405.mRNA mRNA downstream 67626 3330585 ~ 3333453 (+) True CI01000009_03330968_03333405
CI01000009_03335503_03355421.mRNA mRNA downstream 72544 3335503 ~ 3355426 (+) True CI01000009_03335503_03355421
TU58746 other upstream 53352 3202772 ~ 3208984 (+) False CI01000009_03202999_03207060
TU58751 other upstream 53813 3202772 ~ 3208523 (+) False CI01000009_03202999_03207060
TU58749 other upstream 54030 3202772 ~ 3208306 (+) False CI01000009_03202999_03207060
TU58745 other upstream 54412 3202772 ~ 3207924 (+) False CI01000009_03202999_03207060
TU58748 other upstream 54412 3202905 ~ 3207924 (+) True CI01000009_03202999_03207060
TU60796 other downstream 2259283 5522242 ~ 5522356 (+) False G53388
TU60791 other downstream 2272286 5535245 ~ 5538095 (+) False G53388
TU61110 other downstream 2597343 5860302 ~ 5860756 (+) True G53655
TU61103 other downstream 2982605 6245564 ~ 6248392 (+) True G53651
TU63847 other downstream 5866341 9129300 ~ 9130286 (+) True G56100

Expression Profile