RNA id: TU59812


Basic Information

Item Value
RNA id TU59812
length 609
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G52501
representative True

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 3287318 ~ 3290823 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTTTAGTGAATAAGCATGACAAAAACACTACATTCAAACTAGATATTAGTTCAAATATAAAATATGAGCATCTTACATAAGTGAATATATATAGAATTTAGAAAAGAAGTTCTCTAATCTTGAGTCATTCCTCAGATAAATATATCAGTAACTCCCCACAGTCCCGGCAACCACCGGGTCATGACACTAATGCGCAAAACAACACATAAATCTACACATCCAGGGAGGCTACGTTGAAATTTCCGGACAGAACCAGCGGAATGAGCAGCAACAAGACCCAGCCGCAAAGACAAAGGCTTTTTTTTTTTACTTTGGCAAGTAGGATAACAAAATATTCATTACAAGTTAACCTGGACAAACCCTTTAAAGTAGTAGTACTTGAAATAGCAGTAGTAGACTTATGTGACATTATTATTACAGATTTTCCTGTTATACTTTGTAGTTTTGTTTTACACGTTGGTCATTTGAAAATGGACTGTTAGAAACAGCTTTTGTACATTCTGGAGTTGACTACTGGTGTCTTTTGCCTAAAGTGAACCTTTCATGTAAGTGCTGCTGAGGTATTTCAAATTATATTACAATAAAACAACTAGCAATGCTAATAAAAAG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU59831 lncRNA downstream 7985 3278744 ~ 3279333 (-) True G52513
TU59913 lncRNA downstream 63519 3223490 ~ 3223799 (-) True G52592
TU59914 lncRNA downstream 64357 3222632 ~ 3222961 (-) True G52593
TU59839 lncRNA downstream 65376 3220732 ~ 3221942 (-) True G52521
TU59805 lncRNA downstream 79892 3202765 ~ 3207426 (-) True G52496
TU59928 lncRNA upstream 13023 3300949 ~ 3302661 (-) True G52606
TU59949 lncRNA upstream 94058 3381984 ~ 3386060 (-) True G52623
TU59965 lncRNA upstream 118737 3406663 ~ 3406876 (-) True G52639
TU59998 lncRNA upstream 166417 3454343 ~ 3454550 (-) True G52670
TU60056 lncRNA upstream 359788 3647714 ~ 3647979 (-) True G52725
CI01000009_03264437_03267242.mRNA mRNA downstream 20076 3264437 ~ 3267242 (-) True CI01000009_03264437_03267242
CI01000009_03261739_03262843.mRNA mRNA downstream 24475 3261038 ~ 3262843 (-) False CI01000009_03261739_03262843
CI01000009_03244366_03259106.mRNA mRNA downstream 28212 3243598 ~ 3259106 (-) True CI01000009_03244366_03259106
CI01000009_03235111_03242103.mRNA mRNA downstream 45215 3235014 ~ 3242103 (-) True CI01000009_03235111_03242103
CI01000009_03226613_03234223.mRNA mRNA downstream 53095 3225768 ~ 3234223 (-) True CI01000009_03226613_03234223
CI01000009_03292206_03295043.mRNA mRNA upstream 4280 3292206 ~ 3295043 (-) True CI01000009_03292206_03295043
CI01000009_03306370_03311820.mRNA mRNA upstream 18363 3306289 ~ 3311820 (-) True CI01000009_03306370_03311820
CI01000009_03358707_03369503.mRNA mRNA upstream 70082 3358008 ~ 3369577 (-) True CI01000009_03358707_03369503
CI01000009_03378591_03380390.mRNA mRNA upstream 90633 3378559 ~ 3381365 (-) True CI01000009_03378591_03380390
CI01000009_03568782_03574843.mRNA mRNA upstream 280729 3568655 ~ 3574843 (-) True CI01000009_03568782_03574843
TU59814 other downstream 25361 3261203 ~ 3261957 (-) True CI01000009_03261739_03262843
TU59711 other downstream 387911 2899254 ~ 2899407 (-) True G52415
TU59706 other downstream 724785 2551724 ~ 2562533 (-) True G52410
TU59631 other downstream 1046554 2239880 ~ 2240764 (-) False CI01000009_02239426_02240738
TU59632 other downstream 1046839 2239460 ~ 2240479 (-) False CI01000009_02239426_02240738
TU60172 other upstream 929494 4217420 ~ 4231469 (-) True G52828
TU60944 other upstream 2214469 5502395 ~ 5505248 (-) False G53515
TU63500 other upstream 5137895 8425821 ~ 8428012 (-) True G55814
TU64878 other upstream 5570226 8858152 ~ 8860563 (-) True CI01000009_08858198_08860555
TU67286 other upstream 9000291 12288217 ~ 12289518 (-) False G59097

Expression Profile