RNA id: TU59965


Basic Information

Item Value
RNA id TU59965
length 214
lncRNA type inter_gene
GC content 0.50
exon number 1
gene id G52639
representative True

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 3406663 ~ 3406876 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AAAAAACATCTATTGCATGTCATTACGGCCTGGTTTCACAGACTGGGCTTAGACTAAGCCAGGATTAGACCTTAGTTCAATTAGGGCATTTAAGCATCTTTTATAAACGTAGACTAGAAAAAAACATTACTGATGTGCATCTTGAGACAAAACAATGGCACTGACATATTTTAAGATCTGTCAGAGCAAGTTGCTTTCAGTTAAAAAAGCCCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU59949 lncRNA downstream 20603 3381984 ~ 3386060 (-) True G52623
TU59928 lncRNA downstream 104002 3300949 ~ 3302661 (-) True G52606
TU59811 lncRNA downstream 115840 3287318 ~ 3290823 (-) False G52501
TU59812 lncRNA downstream 118737 3287318 ~ 3287926 (-) True G52501
TU59831 lncRNA downstream 127330 3278744 ~ 3279333 (-) True G52513
TU59998 lncRNA upstream 47467 3454343 ~ 3454550 (-) True G52670
TU60056 lncRNA upstream 240838 3647714 ~ 3647979 (-) True G52725
TU60066 lncRNA upstream 324024 3730900 ~ 3731251 (-) True G52735
TU60067 lncRNA upstream 324437 3731313 ~ 3731533 (-) True G52736
TU60070 lncRNA upstream 328947 3735823 ~ 3736139 (-) True G52739
CI01000009_03378591_03380390.mRNA mRNA downstream 25298 3378559 ~ 3381365 (-) True CI01000009_03378591_03380390
CI01000009_03358707_03369503.mRNA mRNA downstream 37086 3358008 ~ 3369577 (-) True CI01000009_03358707_03369503
CI01000009_03306370_03311820.mRNA mRNA downstream 94843 3306289 ~ 3311820 (-) True CI01000009_03306370_03311820
CI01000009_03292206_03295043.mRNA mRNA downstream 111620 3292206 ~ 3295043 (-) True CI01000009_03292206_03295043
CI01000009_03264437_03267242.mRNA mRNA downstream 139421 3264437 ~ 3267242 (-) True CI01000009_03264437_03267242
CI01000009_03568782_03574843.mRNA mRNA upstream 161779 3568655 ~ 3574843 (-) True CI01000009_03568782_03574843
CI01000009_03582190_03582916.mRNA mRNA upstream 175314 3582190 ~ 3583445 (-) True CI01000009_03582190_03582916
CI01000009_03591700_03598877.mRNA mRNA upstream 184552 3591428 ~ 3598877 (-) True CI01000009_03591700_03598877
CI01000009_03599584_03602070.mRNA mRNA upstream 192473 3599349 ~ 3602070 (-) True CI01000009_03599584_03602070
CI01000009_03614390_03616151.mRNA mRNA upstream 206915 3613791 ~ 3616619 (-) True CI01000009_03614390_03616151
TU59814 other downstream 144706 3261203 ~ 3261957 (-) True CI01000009_03261739_03262843
TU59711 other downstream 507256 2899254 ~ 2899407 (-) True G52415
TU59706 other downstream 844130 2551724 ~ 2562533 (-) True G52410
TU59631 other downstream 1165899 2239880 ~ 2240764 (-) False CI01000009_02239426_02240738
TU59632 other downstream 1166184 2239460 ~ 2240479 (-) False CI01000009_02239426_02240738
TU60172 other upstream 810544 4217420 ~ 4231469 (-) True G52828
TU60944 other upstream 2095519 5502395 ~ 5505248 (-) False G53515
TU63500 other upstream 5018945 8425821 ~ 8428012 (-) True G55814
TU64878 other upstream 5451276 8858152 ~ 8860563 (-) True CI01000009_08858198_08860555
TU67286 other upstream 8881341 12288217 ~ 12289518 (-) False G59097

Expression Profile