RNA id: TU60056


Basic Information

Item Value
RNA id TU60056
length 266
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G52725
representative True

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 3647714 ~ 3647979 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CATGTTCAAATCAGTCAGTTTTGCTCTGTTCACACTAAACATCCAACACTGTTATCCACTCAAAGGTTTAGCCATACTGCACTGGTCAGCTGAACATGCTCAAAAGTAGGTCATAACCAGTGTTAGATTATGCTGGCAGAGTCCGCATATTGTGCTACTAAGAGATGACAGTAGTATATCATAACATTCAGAATTTTTCCCATGATTTTTTACTAGATTTTAAATGCTTAGTTTCATTATCAAAGCTCTGTATTTTAACACAGGCC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU59998 lncRNA downstream 193164 3454343 ~ 3454550 (-) True G52670
TU59965 lncRNA downstream 240838 3406663 ~ 3406876 (-) True G52639
TU59949 lncRNA downstream 261654 3381984 ~ 3386060 (-) True G52623
TU59928 lncRNA downstream 345053 3300949 ~ 3302661 (-) True G52606
TU59811 lncRNA downstream 356891 3287318 ~ 3290823 (-) False G52501
TU60066 lncRNA upstream 82921 3730900 ~ 3731251 (-) True G52735
TU60067 lncRNA upstream 83334 3731313 ~ 3731533 (-) True G52736
TU60070 lncRNA upstream 87844 3735823 ~ 3736139 (-) True G52739
TU60074 lncRNA upstream 95348 3743327 ~ 3743553 (-) True G52743
TU60101 lncRNA upstream 399844 4047823 ~ 4048261 (-) True G52770
CI01000009_03643048_03645741.mRNA mRNA downstream 554 3642248 ~ 3647160 (-) True CI01000009_03643048_03645741
CI01000009_03633868_03640910.mRNA mRNA downstream 6804 3633704 ~ 3640910 (-) True CI01000009_03633868_03640910
CI01000009_03622269_03631417.mRNA mRNA downstream 16297 3621937 ~ 3631417 (-) True CI01000009_03622269_03631417
CI01000009_03614390_03616151.mRNA mRNA downstream 31095 3613791 ~ 3616619 (-) True CI01000009_03614390_03616151
CI01000009_03599584_03602070.mRNA mRNA downstream 45644 3599349 ~ 3602070 (-) True CI01000009_03599584_03602070
CI01000009_03664045_03666052.mRNA mRNA upstream 15968 3663947 ~ 3666737 (-) True CI01000009_03664045_03666052
CI01000009_03668956_03672426.mRNA mRNA upstream 20813 3668792 ~ 3672426 (-) True CI01000009_03668956_03672426
CI01000009_03699312_03715114.mRNA mRNA upstream 51333 3699312 ~ 3715114 (-) True CI01000009_03699312_03715114
CI01000009_03770045_03770497.mRNA mRNA upstream 121931 3769910 ~ 3770497 (-) True CI01000009_03770045_03770497
CI01000009_03791699_03858262.mRNA mRNA upstream 142719 3790698 ~ 3859234 (-) True CI01000009_03791699_03858262
TU59814 other downstream 385757 3261203 ~ 3261957 (-) True CI01000009_03261739_03262843
TU59711 other downstream 748307 2899254 ~ 2899407 (-) True G52415
TU59706 other downstream 1085181 2551724 ~ 2562533 (-) True G52410
TU59631 other downstream 1406950 2239880 ~ 2240764 (-) False CI01000009_02239426_02240738
TU59632 other downstream 1407235 2239460 ~ 2240479 (-) False CI01000009_02239426_02240738
TU60172 other upstream 569441 4217420 ~ 4231469 (-) True G52828
TU60944 other upstream 1854416 5502395 ~ 5505248 (-) False G53515
TU63500 other upstream 4777842 8425821 ~ 8428012 (-) True G55814
TU64878 other upstream 5210173 8858152 ~ 8860563 (-) True CI01000009_08858198_08860555
TU67286 other upstream 8640238 12288217 ~ 12289518 (-) False G59097

Expression Profile