RNA id: TU60066


Basic Information

Item Value
RNA id TU60066
length 352
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G52735
representative True

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 3730900 ~ 3731251 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTCAAGGGAGTGGAAATACTTCAAATTTATGATGATAACACACACATTGCGAACTGCATGCTTTCAATCACAATTCGTTATCGATTAGTGAAGGCGAGATAGGCGGAGTCGCGCTGAATGACAGACCAGAAGCGCTCCCTCTCGCGCGCGATCCCAGTTCTCTCAGACAGCGCGCAATCAGTTCTCCTTGCGCCTGAATGGTCAAATGCACACATAGTTGTCAAAATGTCCATCATGTGGAGTATCTCACGTAAATACAGTAGGTTATGGCTTAAGTGGACGTAAACATTTGGGTGAAAACAGGATAAGTGTCAGTAACCATGGATTCGGTCTTAAAGGGACCGCAGCCTAT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU60056 lncRNA downstream 82921 3647714 ~ 3647979 (-) True G52725
TU59998 lncRNA downstream 276350 3454343 ~ 3454550 (-) True G52670
TU59965 lncRNA downstream 324024 3406663 ~ 3406876 (-) True G52639
TU59949 lncRNA downstream 344840 3381984 ~ 3386060 (-) True G52623
TU59928 lncRNA downstream 428239 3300949 ~ 3302661 (-) True G52606
TU60067 lncRNA upstream 62 3731313 ~ 3731533 (-) True G52736
TU60070 lncRNA upstream 4572 3735823 ~ 3736139 (-) True G52739
TU60074 lncRNA upstream 12076 3743327 ~ 3743553 (-) True G52743
TU60101 lncRNA upstream 316572 4047823 ~ 4048261 (-) True G52770
TU60104 lncRNA upstream 331980 4063231 ~ 4063661 (-) True G52773
CI01000009_03699312_03715114.mRNA mRNA downstream 15786 3699312 ~ 3715114 (-) True CI01000009_03699312_03715114
CI01000009_03668956_03672426.mRNA mRNA downstream 58474 3668792 ~ 3672426 (-) True CI01000009_03668956_03672426
CI01000009_03664045_03666052.mRNA mRNA downstream 64163 3663947 ~ 3666737 (-) True CI01000009_03664045_03666052
CI01000009_03643048_03645741.mRNA mRNA downstream 83740 3642248 ~ 3647160 (-) True CI01000009_03643048_03645741
CI01000009_03633868_03640910.mRNA mRNA downstream 89990 3633704 ~ 3640910 (-) True CI01000009_03633868_03640910
CI01000009_03770045_03770497.mRNA mRNA upstream 38659 3769910 ~ 3770497 (-) True CI01000009_03770045_03770497
CI01000009_03791699_03858262.mRNA mRNA upstream 59447 3790698 ~ 3859234 (-) True CI01000009_03791699_03858262
CI01000009_04015167_04016764.mRNA mRNA upstream 283754 4015005 ~ 4016837 (-) True CI01000009_04015167_04016764
CI01000009_04069741_04071278.mRNA mRNA upstream 338463 4069714 ~ 4071604 (-) True CI01000009_04069741_04071278
CI01000009_04196309_04197268.mRNA mRNA upstream 465058 4196309 ~ 4197268 (-) True CI01000009_04196309_04197268
TU59814 other downstream 468943 3261203 ~ 3261957 (-) True CI01000009_03261739_03262843
TU59711 other downstream 831493 2899254 ~ 2899407 (-) True G52415
TU59706 other downstream 1168367 2551724 ~ 2562533 (-) True G52410
TU59631 other downstream 1490136 2239880 ~ 2240764 (-) False CI01000009_02239426_02240738
TU59632 other downstream 1490421 2239460 ~ 2240479 (-) False CI01000009_02239426_02240738
TU60172 other upstream 486169 4217420 ~ 4231469 (-) True G52828
TU60944 other upstream 1771144 5502395 ~ 5505248 (-) False G53515
TU63500 other upstream 4694570 8425821 ~ 8428012 (-) True G55814
TU64878 other upstream 5126901 8858152 ~ 8860563 (-) True CI01000009_08858198_08860555
TU67286 other upstream 8556966 12288217 ~ 12289518 (-) False G59097

Expression Profile