RNA id: TU60101


Basic Information

Item Value
RNA id TU60101
length 439
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G52770
representative True

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 4047823 ~ 4048261 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GCCAATGATGTGCTTTGGTTAAGTCACATGACATGCAATTTTTTTCTGTGGCGCGATTTCTGACAGACTGCCGTCTCTTGTCGGTAGTTGCTGAAAGCAAACTAAAACATCAGTAACAAACAAGGACCCGCCCATGTCACATTCACAAAAAAATTGGTAACATCATCTCAGGTAAGTTATGATGACATATTCACCACTCAAAAAAGTTTTTATGAAAATAGTTTTTGGTAAATCGATAAAATGTCTGTGTTGCCATATGGCAACACTGTGCAACAATGGAATGACATTATTGTAATAGGTTAGCTAGCTAGCAAAGGTCAGCTGCAGTCTGTTAAGCTGTAACAATAACAACATTAATGCTAGTGATATAATGTTGATTAGTCATATGTTAAGGACTGCCATGGCATTTGTATTATGGATTAAATCAACATCGGAGACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU60074 lncRNA downstream 304270 3743327 ~ 3743553 (-) True G52743
TU60070 lncRNA downstream 311684 3735823 ~ 3736139 (-) True G52739
TU60067 lncRNA downstream 316290 3731313 ~ 3731533 (-) True G52736
TU60066 lncRNA downstream 316572 3730900 ~ 3731251 (-) True G52735
TU60056 lncRNA downstream 399844 3647714 ~ 3647979 (-) True G52725
TU60104 lncRNA upstream 14970 4063231 ~ 4063661 (-) True G52773
TU60176 lncRNA upstream 58886 4107147 ~ 4107370 (-) True G52831
TU60223 lncRNA upstream 233084 4281345 ~ 4281805 (-) True G52878
TU60358 lncRNA upstream 279225 4327486 ~ 4327685 (-) True G52995
TU60366 lncRNA upstream 311326 4359587 ~ 4441120 (-) False G53002
CI01000009_04015167_04016764.mRNA mRNA downstream 30986 4015005 ~ 4016837 (-) True CI01000009_04015167_04016764
CI01000009_03791699_03858262.mRNA mRNA downstream 188589 3790698 ~ 3859234 (-) True CI01000009_03791699_03858262
CI01000009_03770045_03770497.mRNA mRNA downstream 277326 3769910 ~ 3770497 (-) True CI01000009_03770045_03770497
CI01000009_03699312_03715114.mRNA mRNA downstream 332709 3699312 ~ 3715114 (-) True CI01000009_03699312_03715114
CI01000009_03668956_03672426.mRNA mRNA downstream 375397 3668792 ~ 3672426 (-) True CI01000009_03668956_03672426
CI01000009_04069741_04071278.mRNA mRNA upstream 21453 4069714 ~ 4071604 (-) True CI01000009_04069741_04071278
CI01000009_04196309_04197268.mRNA mRNA upstream 148048 4196309 ~ 4197268 (-) True CI01000009_04196309_04197268
CI01000009_04738315_04741396.mRNA mRNA upstream 689968 4738229 ~ 4742426 (-) True CI01000009_04738315_04741396
CI01000009_04778332_04780190.mRNA mRNA upstream 729792 4778053 ~ 4786216 (-) True CI01000009_04778332_04780190
CI01000009_04888729_04895882.mRNA mRNA upstream 839936 4888197 ~ 4896479 (-) True CI01000009_04888729_04895882
TU59814 other downstream 785866 3261203 ~ 3261957 (-) True CI01000009_03261739_03262843
TU59711 other downstream 1148416 2899254 ~ 2899407 (-) True G52415
TU59706 other downstream 1485290 2551724 ~ 2562533 (-) True G52410
TU59631 other downstream 1807059 2239880 ~ 2240764 (-) False CI01000009_02239426_02240738
TU59632 other downstream 1807344 2239460 ~ 2240479 (-) False CI01000009_02239426_02240738
TU60172 other upstream 169159 4217420 ~ 4231469 (-) True G52828
TU60944 other upstream 1454134 5502395 ~ 5505248 (-) False G53515
TU63500 other upstream 4377560 8425821 ~ 8428012 (-) True G55814
TU64878 other upstream 4809891 8858152 ~ 8860563 (-) True CI01000009_08858198_08860555
TU67286 other upstream 8239956 12288217 ~ 12289518 (-) False G59097

Expression Profile