RNA id: TU60223


Basic Information

Item Value
RNA id TU60223
length 461
lncRNA type inter_gene
GC content 0.31
exon number 1
gene id G52878
representative True

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 4281345 ~ 4281805 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGCTGGTCATATAATTAGAATATAGTGAAAAAGTTCATTTTTTTATTGTAAATTATTTTAAAAAATGAAACTTTCATATATTCTAGATTCCCTACATGTAAAGTAAAACATTTCAAAAGTTTTTTTTTTTTAATTTGTTGATTAGAGCGTACAGCTAATGAAAGTCCAAAATTCAGTATCTCAAAATATTAGAATATTTACATTTGAGTTTCATTAAATGACCATCCCTACAGTATAAATTCCGGGTATCTCTTGTTCTTTGAAACCACACTAATGGGGAAGACTGCTGACTTGGCAATGGTCCAGGAGACAATCATTGACACCCTCCACAAAGAGAGTAAGTCACAGAAGGTCATTACTGAATGGGGTGGCTGTTTACAGAGTGATGTATCAAAGCATATTAAATGCAAAGTTGACTGGAAGGAAGAAATTGGGTAGGCAAAGGTGCACAAGCAACAGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU60176 lncRNA downstream 173975 4107147 ~ 4107370 (-) True G52831
TU60104 lncRNA downstream 217684 4063231 ~ 4063661 (-) True G52773
TU60101 lncRNA downstream 233084 4047823 ~ 4048261 (-) True G52770
TU60074 lncRNA downstream 537792 3743327 ~ 3743553 (-) True G52743
TU60070 lncRNA downstream 545206 3735823 ~ 3736139 (-) True G52739
TU60358 lncRNA upstream 45681 4327486 ~ 4327685 (-) True G52995
TU60366 lncRNA upstream 77782 4359587 ~ 4441120 (-) False G53002
TU60367 lncRNA upstream 77782 4359587 ~ 4479642 (-) True G53002
TU60372 lncRNA upstream 89617 4371422 ~ 4414015 (-) True G53007
TU60414 lncRNA upstream 197893 4479698 ~ 4512678 (-) False G53048
CI01000009_04196309_04197268.mRNA mRNA downstream 84077 4196309 ~ 4197268 (-) True CI01000009_04196309_04197268
CI01000009_04069741_04071278.mRNA mRNA downstream 209741 4069714 ~ 4071604 (-) True CI01000009_04069741_04071278
CI01000009_04015167_04016764.mRNA mRNA downstream 264508 4015005 ~ 4016837 (-) True CI01000009_04015167_04016764
CI01000009_03791699_03858262.mRNA mRNA downstream 422111 3790698 ~ 3859234 (-) True CI01000009_03791699_03858262
CI01000009_03770045_03770497.mRNA mRNA downstream 510848 3769910 ~ 3770497 (-) True CI01000009_03770045_03770497
CI01000009_04738315_04741396.mRNA mRNA upstream 456424 4738229 ~ 4742426 (-) True CI01000009_04738315_04741396
CI01000009_04778332_04780190.mRNA mRNA upstream 496248 4778053 ~ 4786216 (-) True CI01000009_04778332_04780190
CI01000009_04888729_04895882.mRNA mRNA upstream 606392 4888197 ~ 4896479 (-) True CI01000009_04888729_04895882
CI01000009_04976520_04987680.mRNA mRNA upstream 694681 4976486 ~ 4987707 (-) True CI01000009_04976520_04987680
CI01000009_05046374_05094978.mRNA mRNA upstream 764495 5046300 ~ 5095973 (-) True CI01000009_05046374_05094978
TU60172 other downstream 49876 4217420 ~ 4231469 (-) True G52828
TU59814 other downstream 1019388 3261203 ~ 3261957 (-) True CI01000009_03261739_03262843
TU59711 other downstream 1381938 2899254 ~ 2899407 (-) True G52415
TU59706 other downstream 1718812 2551724 ~ 2562533 (-) True G52410
TU59631 other downstream 2040581 2239880 ~ 2240764 (-) False CI01000009_02239426_02240738
TU60944 other upstream 1220590 5502395 ~ 5505248 (-) False G53515
TU63500 other upstream 4144016 8425821 ~ 8428012 (-) True G55814
TU64878 other upstream 4576347 8858152 ~ 8860563 (-) True CI01000009_08858198_08860555
TU67286 other upstream 8006412 12288217 ~ 12289518 (-) False G59097
TU67287 other upstream 8006412 12288217 ~ 12288977 (-) True G59097

Expression Profile