RNA id: TU60372


Basic Information

Item Value
RNA id TU60372
length 898
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id G53007
representative True

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 4371422 ~ 4414015 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTGAATTTCCAGAAAATTTTGATAATAAAAAAAATGTAATTATTGAGTATTTTTATTTTTATGCTGTACCATCATGTCACTTGGCCCTAGCCTCAGATATTATAAATAATTACAGTAGTGTTACACATACACATGCATTTTGACTTATGGCATAACTATATAACTCGTCTCCCTTCAACACTGCAAGAGAAAAAAAAAAAAAAAATGTAGAAAAATTGATAATGTCCTTGCAGAAAATGACCAGTGCCTTTTTCCATTAAGTTTACGGATATGTCCTTCGACCTTAAAACACAACACAATGCAAAGCCTAGCTCAAATAACTGGGTAAAACACCTGTGAAAAATCAATAGAAATTCTTTCATATTAAGATGGTACACATTTTCTTACAAGGCTATTCTCAGAGTAAAGTAAATTCTGAGTATTCTCTCTCCTTCACCTGCACGATTTCAGCTGAGGCTTCAGCGTCTGTAAGAATGTAGGAAGAGGCGAGACTTTTGATTGGACCGAAGATTTTACGAGAAACTGAATGTGATGTCATGAAAATCCGTGATCCATTTTAGCAGAAGTGAGAGACTGTAAGTTTTGAATGCTTATATCTCCTAAATTTGAATTTTGTCATTGTTTTGGAACACACCAGCTTATTCATAACCTTAAGGCTAACATATTCATACTAAAAGCTAAAAAACTTAAATTTTGATTTCAGGGGGACTTTAAATCCTTTTGAACGCCTTTCCCCTGAATGACGGATAGATGATGTATCAGGCCACTCTATGGGTTTTTAATGCATTCCAGCATCAGGCTCTCAGCCCTATATCTGTGTGCCAGGTGGCAGCTGGGACAGTTCCCTTTTAATCTGGTTTGGCGGTCCTAAATCACTGCCACAACAGCAGGCATTAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU60358 lncRNA downstream 43737 4327486 ~ 4327685 (-) True G52995
TU60223 lncRNA downstream 89617 4281345 ~ 4281805 (-) True G52878
TU60176 lncRNA downstream 264052 4107147 ~ 4107370 (-) True G52831
TU60104 lncRNA downstream 307761 4063231 ~ 4063661 (-) True G52773
TU60101 lncRNA downstream 323161 4047823 ~ 4048261 (-) True G52770
TU60414 lncRNA upstream 65683 4479698 ~ 4512678 (-) False G53048
TU60419 lncRNA upstream 96936 4510951 ~ 4512678 (-) True G53048
TU60426 lncRNA upstream 100866 4514881 ~ 4539189 (-) True G53055
TU60440 lncRNA upstream 132976 4546991 ~ 4557556 (-) True G53068
TU60456 lncRNA upstream 175959 4589974 ~ 4596305 (-) True G53081
CI01000009_04196309_04197268.mRNA mRNA downstream 174154 4196309 ~ 4197268 (-) True CI01000009_04196309_04197268
CI01000009_04069741_04071278.mRNA mRNA downstream 299818 4069714 ~ 4071604 (-) True CI01000009_04069741_04071278
CI01000009_04015167_04016764.mRNA mRNA downstream 354585 4015005 ~ 4016837 (-) True CI01000009_04015167_04016764
CI01000009_03791699_03858262.mRNA mRNA downstream 512188 3790698 ~ 3859234 (-) True CI01000009_03791699_03858262
CI01000009_03770045_03770497.mRNA mRNA downstream 600925 3769910 ~ 3770497 (-) True CI01000009_03770045_03770497
CI01000009_04738315_04741396.mRNA mRNA upstream 324214 4738229 ~ 4742426 (-) True CI01000009_04738315_04741396
CI01000009_04778332_04780190.mRNA mRNA upstream 364038 4778053 ~ 4786216 (-) True CI01000009_04778332_04780190
CI01000009_04888729_04895882.mRNA mRNA upstream 474182 4888197 ~ 4896479 (-) True CI01000009_04888729_04895882
CI01000009_04976520_04987680.mRNA mRNA upstream 562471 4976486 ~ 4987707 (-) True CI01000009_04976520_04987680
CI01000009_05046374_05094978.mRNA mRNA upstream 632285 5046300 ~ 5095973 (-) True CI01000009_05046374_05094978
TU60172 other downstream 139953 4217420 ~ 4231469 (-) True G52828
TU59814 other downstream 1109465 3261203 ~ 3261957 (-) True CI01000009_03261739_03262843
TU59711 other downstream 1472015 2899254 ~ 2899407 (-) True G52415
TU59706 other downstream 1808889 2551724 ~ 2562533 (-) True G52410
TU59631 other downstream 2130658 2239880 ~ 2240764 (-) False CI01000009_02239426_02240738
TU60944 other upstream 1088380 5502395 ~ 5505248 (-) False G53515
TU63500 other upstream 4011806 8425821 ~ 8428012 (-) True G55814
TU64878 other upstream 4444137 8858152 ~ 8860563 (-) True CI01000009_08858198_08860555
TU67286 other upstream 7874202 12288217 ~ 12289518 (-) False G59097
TU67287 other upstream 7874202 12288217 ~ 12288977 (-) True G59097

Expression Profile