RNA id: TU60426


Basic Information

Item Value
RNA id TU60426
length 876
lncRNA type antisense_over
GC content 0.53
exon number 7
gene id G53055
representative True

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 4514881 ~ 4539189 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTTGCAGTTGGTTTCGTCACTGCCGTCTTCACAGTCTTTATCCCCATCGCAGCGCCAGCGCTCTGGGATGCAGGTCCCATCAGCACGGCAGTGAAACTCCTCTCCACTGCATTCCACAGGAGGCAATGCAGGGGCAACACCAGCACAAGTTACATTTTCATCACTGAAGTCCCCGCAGTCATTGTCCCCGTCGCAGGCCCAGTGATCTGGGATACATCTGCCGCTGTTGCACTTATACTGCCCATTAGCACAGGAGTGAATGCAGCCTGCTTCATCACTGTTGTCTCCACAGTCATCATCTGAGTCACAATGCCACTTCATGCTAATGCACCTTCCATTAGCGCAGCTGAACTGGCTGAGAGCTTCGCAGGTTGGGAACGCACAGGATGTGGACTCGTCTGACATGTCTCCGCAATCATCATCTTGATCGCAGCGCCACGCCTCTGGTACACAGCGACCATTACCGCAGGTGAACTGACCAGCCCGACATGGCTGGGCTGAGCATGTTTTATTAGACTCATCTTCATTATCTCCACAGTCATTGGTTCCATCACAAAGCCACCTCTTGGGTATGCAGCGGTTATTGGGACACTTGAACTGGTCAATCGGGCAACTGTGGTTAGAGCATATGTGGGCCTCCTCATCACTGCCATCTAAACAGTCATCATCTCCATCACAAATCCAATTGGCTCGAATGCAACGCCAGTTCCTGCACTGAAACTCATCATTTCTGCACCGCTGGGGCTCCTCTTGACCTGCAGAGTCAGAGCATGTTACATTGTTCTTGTCCAGGTGCTGTTTGTCGGCACATGCGCACACTCGGCCTCCTGGGACGGCCAAACAGAGGGTACCACAACCACCATAATTCACCCGGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU60414 lncRNA downstream 2203 4479698 ~ 4512678 (-) False G53048
TU60419 lncRNA downstream 2203 4510951 ~ 4512678 (-) True G53048
TU60367 lncRNA downstream 35239 4359587 ~ 4479642 (-) True G53002
TU60366 lncRNA downstream 73761 4359587 ~ 4441120 (-) False G53002
TU60372 lncRNA downstream 100866 4371422 ~ 4414015 (-) True G53007
TU60440 lncRNA upstream 7802 4546991 ~ 4557556 (-) True G53068
TU60456 lncRNA upstream 50785 4589974 ~ 4596305 (-) True G53081
TU60463 lncRNA upstream 67369 4606558 ~ 4609919 (-) True G53088
TU60465 lncRNA upstream 79401 4618590 ~ 4618985 (-) True G53090
TU60467 lncRNA upstream 81750 4620939 ~ 4633711 (-) True G53092
CI01000009_04196309_04197268.mRNA mRNA downstream 317613 4196309 ~ 4197268 (-) True CI01000009_04196309_04197268
CI01000009_04069741_04071278.mRNA mRNA downstream 443277 4069714 ~ 4071604 (-) True CI01000009_04069741_04071278
CI01000009_04015167_04016764.mRNA mRNA downstream 498044 4015005 ~ 4016837 (-) True CI01000009_04015167_04016764
CI01000009_03791699_03858262.mRNA mRNA downstream 655647 3790698 ~ 3859234 (-) True CI01000009_03791699_03858262
CI01000009_03770045_03770497.mRNA mRNA downstream 744384 3769910 ~ 3770497 (-) True CI01000009_03770045_03770497
CI01000009_04738315_04741396.mRNA mRNA upstream 199040 4738229 ~ 4742426 (-) True CI01000009_04738315_04741396
CI01000009_04778332_04780190.mRNA mRNA upstream 238864 4778053 ~ 4786216 (-) True CI01000009_04778332_04780190
CI01000009_04888729_04895882.mRNA mRNA upstream 349008 4888197 ~ 4896479 (-) True CI01000009_04888729_04895882
CI01000009_04976520_04987680.mRNA mRNA upstream 437297 4976486 ~ 4987707 (-) True CI01000009_04976520_04987680
CI01000009_05046374_05094978.mRNA mRNA upstream 507111 5046300 ~ 5095973 (-) True CI01000009_05046374_05094978
TU60172 other downstream 283412 4217420 ~ 4231469 (-) True G52828
TU59814 other downstream 1252924 3261203 ~ 3261957 (-) True CI01000009_03261739_03262843
TU59711 other downstream 1615474 2899254 ~ 2899407 (-) True G52415
TU59706 other downstream 1952348 2551724 ~ 2562533 (-) True G52410
TU59631 other downstream 2274117 2239880 ~ 2240764 (-) False CI01000009_02239426_02240738
TU60944 other upstream 963206 5502395 ~ 5505248 (-) False G53515
TU63500 other upstream 3886632 8425821 ~ 8428012 (-) True G55814
TU64878 other upstream 4318963 8858152 ~ 8860563 (-) True CI01000009_08858198_08860555
TU67286 other upstream 7749028 12288217 ~ 12289518 (-) False G59097
TU67287 other upstream 7749028 12288217 ~ 12288977 (-) True G59097

Expression Profile