RNA id: TU60475


Basic Information

Item Value
RNA id TU60475
length 661
lncRNA type antisense_over
GC content 0.49
exon number 5
gene id G53100
representative True

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 4634534 ~ 4638036 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CAAGACTGCCTTAAATCTGACAATATTGCTTGTTTTCCGACAGATGTATCTGAGAGATTTGGTAAACACATACAAGCCTTGCAGTCTTGTTCATCTGATCCTCCATCTCCACAGTCATCAAACAGGTCGCACTGTAGCTGTGCGGGTATACATTTACGATTACTACAGGTAAACTCTGCCTTCCCGCACGGCTTGGGCCTAGTTGATACAGTCTCGCATTCATCTTCATCTGAGTTGTCCCCACAGTTATCCACATTGTTACAGATTTGATCAAGCCGTAGACACACTCTGTCATTTCTGCAGCGATATGGCCTTGCTGGAGGACAAGGTAGTTTGGCACACATCTCGGGGTCCTCATCTGAGTTGTCTCCGCAGTCATCCTCACCGTCGCACACCCACACATGCAGCTTACACAGGGTGTTGTTGCAGATGAACTCATCGGGGCGACAGAAGAAAGCATCATGACCACAGGTTTCCTCATCGCTGTGGTCCACGCAATCAAACACGTCATCGCAGCGCCATCGTTTGGGGATGCAGTGAGCATGGTTTTTGCACAGAAACTCATCTTCTTTGCACTCCTTGACACAGTCCATCTCATCAGAACTGTCCAGACAGTTGTCATGTCCATCACACCTCAGGCTGGCAGACACACAACCTCCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU60467 lncRNA downstream 823 4620939 ~ 4633711 (-) True G53092
TU60465 lncRNA downstream 15549 4618590 ~ 4618985 (-) True G53090
TU60463 lncRNA downstream 24615 4606558 ~ 4609919 (-) True G53088
TU60456 lncRNA downstream 38229 4589974 ~ 4596305 (-) True G53081
TU60440 lncRNA downstream 76978 4546991 ~ 4557556 (-) True G53068
TU60478 lncRNA upstream 4132 4642168 ~ 4643117 (-) True G53101
TU60490 lncRNA upstream 27434 4665470 ~ 4665824 (-) True G53112
TU60497 lncRNA upstream 38425 4676461 ~ 4676686 (-) True G53119
TU60502 lncRNA upstream 42321 4680357 ~ 4680665 (-) True G53124
TU60513 lncRNA upstream 51059 4689095 ~ 4689334 (-) True G53134
CI01000009_04196309_04197268.mRNA mRNA downstream 437266 4196309 ~ 4197268 (-) True CI01000009_04196309_04197268
CI01000009_04069741_04071278.mRNA mRNA downstream 562930 4069714 ~ 4071604 (-) True CI01000009_04069741_04071278
CI01000009_04015167_04016764.mRNA mRNA downstream 617697 4015005 ~ 4016837 (-) True CI01000009_04015167_04016764
CI01000009_03791699_03858262.mRNA mRNA downstream 775300 3790698 ~ 3859234 (-) True CI01000009_03791699_03858262
CI01000009_03770045_03770497.mRNA mRNA downstream 864037 3769910 ~ 3770497 (-) True CI01000009_03770045_03770497
CI01000009_04738315_04741396.mRNA mRNA upstream 100193 4738229 ~ 4742426 (-) True CI01000009_04738315_04741396
CI01000009_04778332_04780190.mRNA mRNA upstream 140017 4778053 ~ 4786216 (-) True CI01000009_04778332_04780190
CI01000009_04888729_04895882.mRNA mRNA upstream 250161 4888197 ~ 4896479 (-) True CI01000009_04888729_04895882
CI01000009_04976520_04987680.mRNA mRNA upstream 338450 4976486 ~ 4987707 (-) True CI01000009_04976520_04987680
CI01000009_05046374_05094978.mRNA mRNA upstream 408264 5046300 ~ 5095973 (-) True CI01000009_05046374_05094978
TU60172 other downstream 403065 4217420 ~ 4231469 (-) True G52828
TU59814 other downstream 1372577 3261203 ~ 3261957 (-) True CI01000009_03261739_03262843
TU59711 other downstream 1735127 2899254 ~ 2899407 (-) True G52415
TU59706 other downstream 2072001 2551724 ~ 2562533 (-) True G52410
TU59631 other downstream 2393770 2239880 ~ 2240764 (-) False CI01000009_02239426_02240738
TU60944 other upstream 864359 5502395 ~ 5505248 (-) False G53515
TU63500 other upstream 3787785 8425821 ~ 8428012 (-) True G55814
TU64878 other upstream 4220116 8858152 ~ 8860563 (-) True CI01000009_08858198_08860555
TU67286 other upstream 7650181 12288217 ~ 12289518 (-) False G59097
TU67287 other upstream 7650181 12288217 ~ 12288977 (-) True G59097

Expression Profile