RNA id: TU60502


Basic Information

Item Value
RNA id TU60502
length 309
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G53124
representative True

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 4680357 ~ 4680665 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GAGATCAAGTGAATGAGTTTATGACCTGCATTCAGATTTAGCATTTTCCTTCAGGTCAGTCCTATGTTCATAATAAAAAATCAGTTTAAATGTCCGATGTATTATCTTGTTCTTTTAACATTTAAGGGGTTTTCCCATGACTGACAGCGCTAGTCAAAGCATTTGTCAGTTGTGTCTTGTTCCGTGTTCACAACAATTCAGTCTTTTCAATGTAAAAGTCTTCGCTACTGACTGACACACTCATAAAGACAGTCTTTGCCACCATCTAATGGCATAATAATGTAACTTCTATTGCTGTTCACGGTCAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU60497 lncRNA downstream 3671 4676461 ~ 4676686 (-) True G53119
TU60490 lncRNA downstream 14533 4665470 ~ 4665824 (-) True G53112
TU60478 lncRNA downstream 37240 4642168 ~ 4643117 (-) True G53101
TU60475 lncRNA downstream 42321 4634534 ~ 4638036 (-) True G53100
TU60467 lncRNA downstream 46646 4620939 ~ 4633711 (-) True G53092
TU60513 lncRNA upstream 8430 4689095 ~ 4689334 (-) True G53134
TU60522 lncRNA upstream 23607 4704272 ~ 4704557 (-) True G53143
TU60527 lncRNA upstream 28563 4709228 ~ 4709432 (-) True G53148
TU60506 lncRNA upstream 82703 4763368 ~ 4771085 (-) True G53127
TU60510 lncRNA upstream 90547 4771212 ~ 4773730 (-) True G53131
CI01000009_04196309_04197268.mRNA mRNA downstream 483089 4196309 ~ 4197268 (-) True CI01000009_04196309_04197268
CI01000009_04069741_04071278.mRNA mRNA downstream 608753 4069714 ~ 4071604 (-) True CI01000009_04069741_04071278
CI01000009_04015167_04016764.mRNA mRNA downstream 663520 4015005 ~ 4016837 (-) True CI01000009_04015167_04016764
CI01000009_03791699_03858262.mRNA mRNA downstream 821123 3790698 ~ 3859234 (-) True CI01000009_03791699_03858262
CI01000009_03770045_03770497.mRNA mRNA downstream 909860 3769910 ~ 3770497 (-) True CI01000009_03770045_03770497
CI01000009_04738315_04741396.mRNA mRNA upstream 57564 4738229 ~ 4742426 (-) True CI01000009_04738315_04741396
CI01000009_04778332_04780190.mRNA mRNA upstream 97388 4778053 ~ 4786216 (-) True CI01000009_04778332_04780190
CI01000009_04888729_04895882.mRNA mRNA upstream 207532 4888197 ~ 4896479 (-) True CI01000009_04888729_04895882
CI01000009_04976520_04987680.mRNA mRNA upstream 295821 4976486 ~ 4987707 (-) True CI01000009_04976520_04987680
CI01000009_05046374_05094978.mRNA mRNA upstream 365635 5046300 ~ 5095973 (-) True CI01000009_05046374_05094978
TU60172 other downstream 448888 4217420 ~ 4231469 (-) True G52828
TU59814 other downstream 1418400 3261203 ~ 3261957 (-) True CI01000009_03261739_03262843
TU59711 other downstream 1780950 2899254 ~ 2899407 (-) True G52415
TU59706 other downstream 2117824 2551724 ~ 2562533 (-) True G52410
TU59631 other downstream 2439593 2239880 ~ 2240764 (-) False CI01000009_02239426_02240738
TU60944 other upstream 821730 5502395 ~ 5505248 (-) False G53515
TU63500 other upstream 3745156 8425821 ~ 8428012 (-) True G55814
TU64878 other upstream 4177487 8858152 ~ 8860563 (-) True CI01000009_08858198_08860555
TU67286 other upstream 7607552 12288217 ~ 12289518 (-) False G59097
TU67287 other upstream 7607552 12288217 ~ 12288977 (-) True G59097

Expression Profile