RNA id: TU60510


Basic Information

Item Value
RNA id TU60510
length 2519
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G53131
representative True

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 4771212 ~ 4773730 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GCTGATAACACACTGGAAGGTCTCCCTCCTCTTTAGCCCGGAGGACACGGCGTCCATGATTTCCAACAAGAATGTCAAATTTGGACTCGTCTGACCATAGAACACTTTTTCACTTTGAAACAGACCATTTTAAATGAGCCTTGGCCCACAGGACACGATGGCGCTTCTGGACCGTGTTCACATATGGCTTCCTTTTTGCATGACAGAGCTTTAGTTGGCAACTGCAGATGGCACGGCGGATTGTGTTTACCGAGAGTGGTTTCTGGAAGTATTCCTGGGCCCATTTAGTAATGTCATTGACACAATCATGCCGATGTGTGATGCAGTATCGTCTGAGGGCCCGAAGACCACGGACATCCAATAAAGGTCTTCGGCCTTGTCCCTTACGCTCAGAGATTTCTCCAGTTTCTCTGAATCTTTTGATGATGTTATGCACTGTAGATGATGAGATTTGCAAAGCCTTTGCAATTTGATGTTGAGGAACATTGTTTTTAAAGTATTCCACAATCTTTTTACGCACTCTTTCACAGTTCTGCCCATCTTTACTTCTGAGAGACTCTGCCTCTCTAAAGGGGGTCGCACACCAGACGAGAAGCTCAGCGCTGCGCCTCGGACAACTCACAGGTATCGCACACCAGAAGCGCACATTATATACACGAGAGCTTAATTTTGAATTGACTCCTGATAGAAGAGCTGCGCGATGGGTGAGTTTTAAGTCGACAGGGAAACGTTACATATGCCTATGCTTTAATATTTCGCACTGAGGTTAGTGTACATGGAAAAATGGCACAACAGAGCAAAATGAAAGAAAAGGCTACATTTATTATACATTTTTTCCAATATTTTTAGACTTTACTCAAGCTGTTAAACTTACAATGTAAAACTAATCTATCTTGCAACACAGGATGAAGTCAGTATGTACATTAACGATGATTTGAGAGAAATATTTTGAACAACTTCCTGAGTCGTAGCTGGGCGCTGCGGACAGGTGCCCAATGTCGCCGCTGGTGTGCGTAGAAATGCGTTCGAATTTTAAAGACATGGCGCTGAGCTTCGCGTCCGGTGTGCGACCCCCTTAAGATATCCCTTTTATAGCTAATCATGTTACAGACCTGATATCAATTAACTTAATTAGTTGCTAGATGTTCTCCCAGCTGAATCTTTTCAAAATTTCTTGCTTTTTCAGCCATTTGCTGCCCCCATGACAACTTTTTTGAGACCTGTAGCAGGCATGAAATTTGAAATGAGCTCATTTTGTGCATAAAACTGTAAAATTTCTCCATTTAAACATTTGTTATGTTATCTATGTTCTATTGTGAATAAAATATTGGCTCATGTGATTTGAAAGTCTTTTAGTTTTCATTTTATTCAAATTTAAAAAAACGTCCCAGCTTTTCCAGAATTCGGGTTGTAGATCCATATGTGGGCTTATGAAATTATAAGCATATTAACCCATAATAATGACCATTTTAATGACAAATTATGGCAGGTATGTGTCTGTATGTTGTTTTACATTCGATTTAGTCACCATAAATCTCTTAACACCTGTTAACCTCAGATGCTGTTTACAGATTGTATTGTATGTGTCTTGTCATGTGAGATGGTTTGAGGTGTTTTCTTAACGTGTGTGTCTTCATGAGTTTGCCTGCAGCGTAGCTATGGTGTCATTAACATTCCAGCAGTCATAGCGGCACCGTTAACACTCCGCTACATGACGAGACAGCTCTGCCTGTACCTCTCTACCTGCTGCACTTTCTCTCTGAACGTCTCTCTTACTTTTCTCACACCCGCCTACACAAACAAATACATATAAACACATACCAACCTACATAACTAAGAAACTAAAACCGAAATATTTATTTTTGTTACATGTGGGTGTCAGTTCTGACTCATATCATTCTTGTGCTGTCATTTTGAGAGGACTTCTACAAACAAGTCATTTTTCACACCTTTTCATCTGCCTCTCTTGACAGATGCAAGACAGGTACACTTCAGGTAATTATCTGACTTGGGTTATGTGGTATGTTTTGGAAAGTGCTTGTTGTTTTGTGGTGTTGTACCAGTATTTGGCTGAAACGCCCTGACCGTTGGTAGGTGTGCTGGCCTGGTCTCTCTGTTTGCCTAAGGTTTATTTTAGTGCCGCATATTTTGCATTTATACCTGTAGGGCTGAGAAAAGGTAGTACTTGTTGATGGTGCTTTCAGGGGATCCACTCTGATGTAATCAGTCTCTGTGCCTACATGTTGTGCAGCGAGAGCCCTCTTGACTCTGAGCCAAGAATGTACTAAGAATGACAAATATTGAAACCATGGAGAGCAGTCATTTCATTAATGTGCAAAGTGTTAACCAGTGTATATATAAATATATACTGATGTTATCTCAATTTGTTGATCGATATCTCAGTGTGTGGTTTAAGTTAAGGCAATGTGTTCATCTAATGATGTTAACCGAGCGCTCTTGCAGACTTTGTAGAACCTGCTGCATAGAACCGCAGTTGCATGACTTAGTCTTGTAATCGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU60506 lncRNA downstream 127 4763368 ~ 4771085 (-) True G53127
TU60527 lncRNA downstream 61780 4709228 ~ 4709432 (-) True G53148
TU60522 lncRNA downstream 66655 4704272 ~ 4704557 (-) True G53143
TU60513 lncRNA downstream 81878 4689095 ~ 4689334 (-) True G53134
TU60502 lncRNA downstream 90547 4680357 ~ 4680665 (-) True G53124
TU60511 lncRNA upstream 30708 4804438 ~ 4809769 (-) True G53132
TU60512 lncRNA upstream 46993 4820723 ~ 4830767 (-) True G53133
TU60549 lncRNA upstream 64732 4838462 ~ 4838771 (-) True G53167
TU60555 lncRNA upstream 73171 4846901 ~ 4847103 (-) True G53173
TU60832 lncRNA upstream 240165 5013895 ~ 5017158 (-) True G53415
CI01000009_04738315_04741396.mRNA mRNA downstream 28786 4738229 ~ 4742426 (-) True CI01000009_04738315_04741396
CI01000009_04196309_04197268.mRNA mRNA downstream 573944 4196309 ~ 4197268 (-) True CI01000009_04196309_04197268
CI01000009_04069741_04071278.mRNA mRNA downstream 699608 4069714 ~ 4071604 (-) True CI01000009_04069741_04071278
CI01000009_04015167_04016764.mRNA mRNA downstream 754375 4015005 ~ 4016837 (-) True CI01000009_04015167_04016764
CI01000009_03791699_03858262.mRNA mRNA downstream 911978 3790698 ~ 3859234 (-) True CI01000009_03791699_03858262
CI01000009_04778332_04780190.mRNA mRNA upstream 4323 4778053 ~ 4786216 (-) True CI01000009_04778332_04780190
CI01000009_04888729_04895882.mRNA mRNA upstream 114467 4888197 ~ 4896479 (-) True CI01000009_04888729_04895882
CI01000009_04976520_04987680.mRNA mRNA upstream 202756 4976486 ~ 4987707 (-) True CI01000009_04976520_04987680
CI01000009_05046374_05094978.mRNA mRNA upstream 272570 5046300 ~ 5095973 (-) True CI01000009_05046374_05094978
CI01000009_05110455_05136845.mRNA mRNA upstream 336475 5110205 ~ 5138314 (-) True CI01000009_05110455_05136845
TU60172 other downstream 539743 4217420 ~ 4231469 (-) True G52828
TU59814 other downstream 1509255 3261203 ~ 3261957 (-) True CI01000009_03261739_03262843
TU59711 other downstream 1871805 2899254 ~ 2899407 (-) True G52415
TU59706 other downstream 2208679 2551724 ~ 2562533 (-) True G52410
TU59631 other downstream 2530448 2239880 ~ 2240764 (-) False CI01000009_02239426_02240738
TU60944 other upstream 728665 5502395 ~ 5505248 (-) False G53515
TU63500 other upstream 3652091 8425821 ~ 8428012 (-) True G55814
TU64878 other upstream 4084422 8858152 ~ 8860563 (-) True CI01000009_08858198_08860555
TU67286 other upstream 7514487 12288217 ~ 12289518 (-) False G59097
TU67287 other upstream 7514487 12288217 ~ 12288977 (-) True G59097

Expression Profile