RNA id: TU60893


Basic Information

Item Value
RNA id TU60893
length 899
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G53476
representative True

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 5240424 ~ 5241350 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TATGGGAAGCTGTTTGTGGAGTGATGAATCACAATGAAACACGAGTTGCATGGTGATGCTCCAGAGAGGTGTATCTGAAAATGTGGTGAGAAATATAATAAATGCATCTCTACCACAGTGAAGCATGGAAGAAGAGGTGTCATTGTGTGAGGAGCCTTTTTAGCTGCTGGTGTTGATGAGCTACTTCACTTTGAAAAGTCATTTAATGCTTTGGAGTACAGGAGAATATTGCAGAATGGCTTGTTGGAAAGTTATCTAAAGAGAAATGTTTAGGTGTTATTTTTCAACAGGACAATGCTCCTGCCCAAATTGCAAAGACATCCAAGAGGTGGCTTCAGAACAAGTCTATCAGGCTCATGTTTTGCCCTGGTCAGAGTCCAGATTTGAACCCTATAGTGAATATCTAGTCTCACATTAAACGTATTACTCATTGAAGCCATTAACATTGAGTAGAACACTGACTCTTCTTCTTGTAAAACTGTCTACAAGTTGGGGACGGCTATTCCATGCTAAGTTACTTTATCTACAGTTTTTGTGCAACTCTTGCTAATTTCCTGACCAGTGATTTGTGATTCAAATGGTTAAGAATAGGGCTGGACGATTAATCGAAAAGTAATTGAAACAGAAATTCAGAACCTCTAATCGACGTAATTTTCCCATGTCGGTTATTTCTGTTATTAATCCTGTAAATACTTTCCCCTTAAAAACATACTACCACGTGTGTAGTCACATGACTCTGCCCAGTCCAGTCAGTGTCATGGAAACAACATGGAGGCAAACTCAAACACTGAGTCAACACACACACACACACACACACACACACACACACACACACACACACAGACAGACAGCCCGCGGGGTTTATTTACAGTACAAACCTTTGTCAGTGAATTATGAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU60832 lncRNA downstream 223266 5013895 ~ 5017158 (-) True G53415
TU60555 lncRNA downstream 393321 4846901 ~ 4847103 (-) True G53173
TU60549 lncRNA downstream 401653 4838462 ~ 4838771 (-) True G53167
TU60512 lncRNA downstream 409657 4820723 ~ 4830767 (-) True G53133
TU60511 lncRNA downstream 430655 4804438 ~ 4809769 (-) True G53132
TU60842 lncRNA upstream 8940 5250290 ~ 5251759 (-) True G53425
TU60820 lncRNA upstream 124416 5365766 ~ 5367842 (-) False CI01000009_05367161_05370504
TU60821 lncRNA upstream 124416 5368144 ~ 5368380 (-) True G53405
TU60906 lncRNA upstream 128230 5369580 ~ 5369781 (-) True G53487
TU60909 lncRNA upstream 132920 5374270 ~ 5374719 (-) True G53490
CI01000009_05190789_05192684.mRNA mRNA downstream 47534 5190494 ~ 5192890 (-) True CI01000009_05190789_05192684
CI01000009_05110455_05136845.mRNA mRNA downstream 102110 5110205 ~ 5138314 (-) True CI01000009_05110455_05136845
CI01000009_05046374_05094978.mRNA mRNA downstream 144451 5046300 ~ 5095973 (-) True CI01000009_05046374_05094978
CI01000009_04976520_04987680.mRNA mRNA downstream 252717 4976486 ~ 4987707 (-) True CI01000009_04976520_04987680
CI01000009_04888729_04895882.mRNA mRNA downstream 343945 4888197 ~ 4896479 (-) True CI01000009_04888729_04895882
CI01000009_05278137_05361256.mRNA mRNA upstream 35787 5277137 ~ 5361478 (-) True CI01000009_05278137_05361256
CI01000009_05362086_05363378.mRNA mRNA upstream 120692 5362042 ~ 5364081 (-) True CI01000009_05362086_05363378
CI01000009_05367161_05370504.mRNA mRNA upstream 124585 5365935 ~ 5370504 (-) False CI01000009_05367161_05370504
CI01000009_05402729_05410456.mRNA mRNA upstream 161154 5402504 ~ 5410456 (-) True CI01000009_05402729_05410456
CI01000009_05513478_05515588.mRNA mRNA upstream 271919 5513269 ~ 5515588 (-) True CI01000009_05513478_05515588
TU60172 other downstream 1008955 4217420 ~ 4231469 (-) True G52828
TU59814 other downstream 1978467 3261203 ~ 3261957 (-) True CI01000009_03261739_03262843
TU59711 other downstream 2341017 2899254 ~ 2899407 (-) True G52415
TU59706 other downstream 2677891 2551724 ~ 2562533 (-) True G52410
TU59631 other downstream 2999660 2239880 ~ 2240764 (-) False CI01000009_02239426_02240738
TU60944 other upstream 261045 5502395 ~ 5505248 (-) False G53515
TU63500 other upstream 3184471 8425821 ~ 8428012 (-) True G55814
TU64878 other upstream 3616802 8858152 ~ 8860563 (-) True CI01000009_08858198_08860555
TU67286 other upstream 7046867 12288217 ~ 12289518 (-) False G59097
TU67287 other upstream 7046867 12288217 ~ 12288977 (-) True G59097

Expression Profile