RNA id: TU60842


Basic Information

Item Value
RNA id TU60842
length 1319
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G53425
representative True

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 5250290 ~ 5251759 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GGCGGAGGCACTTAGAAGGCGAACGTTTATATAAAGCATATACGGTTGTATTTTTTTAGAAAATGACCGATCGTTTCGCTAGATAAGACACTTATTCCTCGTCTGGTATCGTTTGAAGCCCTTTGAAGCTGCACTGAAACTGTAATTTTGACCTTCAACCGTTTGGAGGCCACTAAAGTGCACTATAAGGAGAATAATTCTGGAATGTTTTCATCAAAAACCTTCATTTCTTTTCGACTAAAGAAAGAAGGACATGGACATCTTGGATGACATGGGGGAGAAAATGGAGACGAAAGGGAATGTTCATTTGGTTGCCGGCCAATTCTGATATTGATCCTCATGCGTTGGTGGAATACCCTCCTGACACTTGACTGATCTTGCTATTACCTCACCAATAAGTGGATGTAAGGAACATAAGACTCGTGGCCTGCGAGGAAAGAGGATTTCGTGCTTACGGAGGGTGGTTTATGAGATGGATGAGGTTAAAAAAGTCATTCACAAAGTCACAGAGATCCTTCTCAGACAGTAATTATCAACCTCACAGAGAAAGAGCTCAGGTCATTGCGCAAAGGAAATGAAACGCCAGTAAGCTCATGAATATTACAGAAGAAACTGAAATAAGTTATTTCTTTTGCATTTGGTGGTATTAAGTTAAAACAGGTCAACAAAAGAACATCTGAACCAAGACTAGGATTTACACCATTAGCCTTTTTGCACAGTTGAAGTATGTTGTATTTAATTGGACTGCAGCTTTACTATACACAAAAAGTTGTTTAATAGACAGGAAACAAAGTGAAAAGAGGCTTTACATTAAGAATTGGAGGCCTTGCGCTGCTAGAAGGCCATTCAAGATGTTTACTAATGTACTGTTTGTAAAGGAAATGAGCACTAATGAGAAAGAGGATGAACAGTGGGACCAGGAGGAGATAATTGGAACCAGAACTACAAATCATTCTACAAACAATCTAAACAAACTTTCTTGTTCGAGTGTCAGGGTCACGTTCATTTGCGAATTCATCTGTTCTTTTGCTGAACTGCTCTAGAATTCATTTGATGCATCAATGAATAAAACTCAATTGGAATGCCAGGGAAAATAAATAAATAAATAAAATAAATCACAAGGAGCAAAAATCTGATTGTTTGGAATATTCAACAAAGTTGTTTGTAGCTTGAAAAGCAACCCCAATCCAAACTACATCCACATGTGGTTTGAATGAAATGCAGATTTTTGAGCTACCCTAATCCTTACTGTATGTTCTGGACATGCCCTGTCCTTTCTTTACTACTGTTGCACAGATTTTATTTGAATTAAGGCGAGA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU60893 lncRNA downstream 8940 5240424 ~ 5241350 (-) True G53476
TU60832 lncRNA downstream 233132 5013895 ~ 5017158 (-) True G53415
TU60555 lncRNA downstream 403187 4846901 ~ 4847103 (-) True G53173
TU60549 lncRNA downstream 411519 4838462 ~ 4838771 (-) True G53167
TU60512 lncRNA downstream 419523 4820723 ~ 4830767 (-) True G53133
TU60820 lncRNA upstream 114007 5365766 ~ 5367842 (-) False CI01000009_05367161_05370504
TU60821 lncRNA upstream 114007 5368144 ~ 5368380 (-) True G53405
TU60906 lncRNA upstream 117821 5369580 ~ 5369781 (-) True G53487
TU60909 lncRNA upstream 122511 5374270 ~ 5374719 (-) True G53490
TU60917 lncRNA upstream 135562 5387321 ~ 5387664 (-) True G53498
CI01000009_05190789_05192684.mRNA mRNA downstream 57400 5190494 ~ 5192890 (-) True CI01000009_05190789_05192684
CI01000009_05110455_05136845.mRNA mRNA downstream 111976 5110205 ~ 5138314 (-) True CI01000009_05110455_05136845
CI01000009_05046374_05094978.mRNA mRNA downstream 154317 5046300 ~ 5095973 (-) True CI01000009_05046374_05094978
CI01000009_04976520_04987680.mRNA mRNA downstream 262583 4976486 ~ 4987707 (-) True CI01000009_04976520_04987680
CI01000009_04888729_04895882.mRNA mRNA downstream 353811 4888197 ~ 4896479 (-) True CI01000009_04888729_04895882
CI01000009_05278137_05361256.mRNA mRNA upstream 25378 5277137 ~ 5361478 (-) True CI01000009_05278137_05361256
CI01000009_05362086_05363378.mRNA mRNA upstream 110283 5362042 ~ 5364081 (-) True CI01000009_05362086_05363378
CI01000009_05367161_05370504.mRNA mRNA upstream 114176 5365935 ~ 5370504 (-) False CI01000009_05367161_05370504
CI01000009_05402729_05410456.mRNA mRNA upstream 150745 5402504 ~ 5410456 (-) True CI01000009_05402729_05410456
CI01000009_05513478_05515588.mRNA mRNA upstream 261510 5513269 ~ 5515588 (-) True CI01000009_05513478_05515588
TU60172 other downstream 1018821 4217420 ~ 4231469 (-) True G52828
TU59814 other downstream 1988333 3261203 ~ 3261957 (-) True CI01000009_03261739_03262843
TU59711 other downstream 2350883 2899254 ~ 2899407 (-) True G52415
TU59706 other downstream 2687757 2551724 ~ 2562533 (-) True G52410
TU59631 other downstream 3009526 2239880 ~ 2240764 (-) False CI01000009_02239426_02240738
TU60944 other upstream 250636 5502395 ~ 5505248 (-) False G53515
TU63500 other upstream 3174062 8425821 ~ 8428012 (-) True G55814
TU64878 other upstream 3606393 8858152 ~ 8860563 (-) True CI01000009_08858198_08860555
TU67286 other upstream 7036458 12288217 ~ 12289518 (-) False G59097
TU67287 other upstream 7036458 12288217 ~ 12288977 (-) True G59097

Expression Profile