RNA id: TU60909


Basic Information

Item Value
RNA id TU60909
length 344
lncRNA type inter_gene
GC content 0.31
exon number 2
gene id G53490
representative True

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 5374270 ~ 5374719 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TCTCCTCGCGCCTGAATGGTCAAATGCACACATAGTTGTCAAAATGTCCATCGTGTGGAGTATCTCACATAAATACAGTCGGTTATGGCTTAAGTCGACGTAAACATTTGGGTGAAAACAGGATTTGTGTCAGTATCCATGGATTCGGTCTTAAAGGGACCGTAGCCTATATTTGTCATTAATGTTAATAAAACAACAAAAGATGTTAAATAAATGTATACATGGTAAATAAACCTACTGTATCTGAAAAACAAGTTTATTTAATTTGTATCTCTATAGTATTTGTTGTATTGTTTGTAATTTGTTTGTAAATTTCTTTTTATAACAACAATTATATATATTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU60906 lncRNA downstream 4489 5369580 ~ 5369781 (-) True G53487
TU60821 lncRNA downstream 5890 5368144 ~ 5368380 (-) True G53405
TU60820 lncRNA downstream 6428 5365766 ~ 5367842 (-) False CI01000009_05367161_05370504
TU60842 lncRNA downstream 122511 5250290 ~ 5251759 (-) True G53425
TU60893 lncRNA downstream 132920 5240424 ~ 5241350 (-) True G53476
TU60917 lncRNA upstream 12602 5387321 ~ 5387664 (-) True G53498
TU60924 lncRNA upstream 18806 5393525 ~ 5394325 (-) True G53503
TU60932 lncRNA upstream 33279 5407998 ~ 5408344 (-) True G53510
TU60978 lncRNA upstream 99517 5474236 ~ 5476740 (-) True G53545
TU60934 lncRNA upstream 117092 5491811 ~ 5498995 (-) True G53511
CI01000009_05367161_05370504.mRNA mRNA downstream 3766 5365935 ~ 5370504 (-) False CI01000009_05367161_05370504
CI01000009_05362086_05363378.mRNA mRNA downstream 10189 5362042 ~ 5364081 (-) True CI01000009_05362086_05363378
CI01000009_05278137_05361256.mRNA mRNA downstream 12792 5277137 ~ 5361478 (-) True CI01000009_05278137_05361256
CI01000009_05190789_05192684.mRNA mRNA downstream 181380 5190494 ~ 5192890 (-) True CI01000009_05190789_05192684
CI01000009_05110455_05136845.mRNA mRNA downstream 235956 5110205 ~ 5138314 (-) True CI01000009_05110455_05136845
CI01000009_05402729_05410456.mRNA mRNA upstream 27785 5402504 ~ 5410456 (-) True CI01000009_05402729_05410456
CI01000009_05513478_05515588.mRNA mRNA upstream 138550 5513269 ~ 5515588 (-) True CI01000009_05513478_05515588
CI01000009_05571226_05587885.mRNA mRNA upstream 195782 5570501 ~ 5588015 (-) True CI01000009_05571226_05587885
CI01000009_05675971_05682578.mRNA mRNA upstream 301053 5675772 ~ 5683383 (-) True CI01000009_05675971_05682578
CI01000009_05724421_05725824.mRNA mRNA upstream 349122 5723841 ~ 5725834 (-) True CI01000009_05724421_05725824
TU60172 other downstream 1142801 4217420 ~ 4231469 (-) True G52828
TU59814 other downstream 2112313 3261203 ~ 3261957 (-) True CI01000009_03261739_03262843
TU59711 other downstream 2474863 2899254 ~ 2899407 (-) True G52415
TU59706 other downstream 2811737 2551724 ~ 2562533 (-) True G52410
TU59631 other downstream 3133506 2239880 ~ 2240764 (-) False CI01000009_02239426_02240738
TU60944 other upstream 127676 5502395 ~ 5505248 (-) False G53515
TU63500 other upstream 3051102 8425821 ~ 8428012 (-) True G55814
TU64878 other upstream 3483433 8858152 ~ 8860563 (-) True CI01000009_08858198_08860555
TU67286 other upstream 6913498 12288217 ~ 12289518 (-) False G59097
TU67287 other upstream 6913498 12288217 ~ 12288977 (-) True G59097

Expression Profile