RNA id: TU60945


Basic Information

Item Value
RNA id TU60945
length 909
lncRNA type antisense_over
GC content 0.40
exon number 2
gene id G53515
representative True

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 5502395 ~ 5505248 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CCCATTTAAATGAGCTGACAATTAGACAAACTAAACAATGCTCAACATATGACTCATTGCAGACAGTATTTATCATAAAACAGGCTGTGCCATGTCTACCTGTCAGACCAGAAGGAAGCTGTGGACCATCTTCATCACTATCATCCTCAGCTGATCCCTCTTTTTCATTTCCATTCTCTGCAAACTTCACAGGCTCTGCACATTCCCCCTCCTGCATTTCACTCTGTTGCTCTTCTCCCACCAATGCTTCCGTTGTCTCTTTAACTTCATCCTGCTTTTTGACCTTTTTCCACTGGATGTTGAGTCTTCTGTGCCATCCAATTTTCTTTTCTTTTTCTTCTTGATTTTCTGTGAGGTTTCACCGCCCTCGGTGGAGACACTTTGCTGCTGTTTTTCAATGACTTTTGGAGCAGAATCACTGGTCACATCAGCTTCTTCCAGCACAACCTTCACCTCTGCCAGATATGAGACACATACAACACATTTCATAAACTTCATCTTAAAAGAACAAGCATGTACACTCAATATGAGTAGATTTATGCATTGACGATGTCGACAACATGTTTCTCAATAAATTAAATAACACAATCAACATCATAATTACGTTTTAACTAAACCTATATGTCGTGCTAGGTTAAATACAACTAACTGAATTGTAAGACAAAACTTTACTAATGCTTTTAAAAGCGGTGTGATTATCACATGGTGGATCCGCGATAACGCCTGAATTAAGTATACGTCTCATTCATCTTTACAACAAAAGTGGAAAAATTACCTCTAACGTTTTCTTCTTCTTCTTCCTTCTGAGATCTGAGCAGTTTCCGTTGTTTATTTTTTTCATTTCTCTTTTGAATTTTCTTGCGGAGAATTTTCATCTGCATGTCCGCCATGGCTGTACACAAACACGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU60934 lncRNA downstream 3400 5491811 ~ 5498995 (-) True G53511
TU60978 lncRNA downstream 25655 5474236 ~ 5476740 (-) True G53545
TU60932 lncRNA downstream 94051 5407998 ~ 5408344 (-) True G53510
TU60924 lncRNA downstream 108070 5393525 ~ 5394325 (-) True G53503
TU60917 lncRNA downstream 114731 5387321 ~ 5387664 (-) True G53498
TU60943 lncRNA upstream 3582 5506972 ~ 5508789 (-) True G53514
TU60990 lncRNA upstream 20254 5523644 ~ 5539688 (-) True G53552
TU60995 lncRNA upstream 35815 5539205 ~ 5546637 (-) True G53556
TU61005 lncRNA upstream 49500 5552890 ~ 5553101 (-) True G53566
TU61390 lncRNA upstream 81649 5585039 ~ 5596678 (-) True G53916
CI01000009_05402729_05410456.mRNA mRNA downstream 91939 5402504 ~ 5410456 (-) True CI01000009_05402729_05410456
CI01000009_05367161_05370504.mRNA mRNA downstream 131891 5365935 ~ 5370504 (-) False CI01000009_05367161_05370504
CI01000009_05362086_05363378.mRNA mRNA downstream 138314 5362042 ~ 5364081 (-) True CI01000009_05362086_05363378
CI01000009_05278137_05361256.mRNA mRNA downstream 140917 5277137 ~ 5361478 (-) True CI01000009_05278137_05361256
CI01000009_05190789_05192684.mRNA mRNA downstream 309505 5190494 ~ 5192890 (-) True CI01000009_05190789_05192684
CI01000009_05513478_05515588.mRNA mRNA upstream 9879 5513269 ~ 5515588 (-) True CI01000009_05513478_05515588
CI01000009_05571226_05587885.mRNA mRNA upstream 67111 5570501 ~ 5588015 (-) True CI01000009_05571226_05587885
CI01000009_05675971_05682578.mRNA mRNA upstream 172382 5675772 ~ 5683383 (-) True CI01000009_05675971_05682578
CI01000009_05724421_05725824.mRNA mRNA upstream 220451 5723841 ~ 5725834 (-) True CI01000009_05724421_05725824
CI01000009_05759177_05759509.mRNA mRNA upstream 255609 5758999 ~ 5759770 (-) True CI01000009_05759177_05759509
TU60172 other downstream 1270926 4217420 ~ 4231469 (-) True G52828
TU59814 other downstream 2240438 3261203 ~ 3261957 (-) True CI01000009_03261739_03262843
TU59711 other downstream 2602988 2899254 ~ 2899407 (-) True G52415
TU59706 other downstream 2939862 2551724 ~ 2562533 (-) True G52410
TU59631 other downstream 3261631 2239880 ~ 2240764 (-) False CI01000009_02239426_02240738
TU63500 other upstream 2922431 8425821 ~ 8428012 (-) True G55814
TU64878 other upstream 3354762 8858152 ~ 8860563 (-) True CI01000009_08858198_08860555
TU67286 other upstream 6784827 12288217 ~ 12289518 (-) False G59097
TU67287 other upstream 6784827 12288217 ~ 12288977 (-) True G59097
TU67750 other upstream 8471998 13975388 ~ 13978614 (-) True CI01000009_13975122_13976026

Expression Profile