RNA id: TU60990


Basic Information

Item Value
RNA id TU60990
length 576
lncRNA type read_through
GC content 0.42
exon number 2
gene id G53552
representative True

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 5523644 ~ 5539688 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTGTTTTTCGCTGACGTTTAAAAACTAGAAGTCCCAGCAGCAGAATCAGCACACAGCCAGTGACAACACACGCCACGACGATCCCCATCTGTAGATGACTGTCCTGTGTCATGATGTCTTCTGCAGAAACATGTGGAGACAGATAATTACACCAACACTGACCAGTGTCATGACTACACACTGACAAATCACTATTTGTTTGCTAGTAGGCTGAAAATATATAATCTTATTCTAAGGTGAAAAATACTGTATATTAATATTATTTGTTAGAGTTTCTGTTGATGTACTTGGAGCATTAGTAGTTGATGAGGAAAGACTGATTGTTATTGGGGCCAGAGCTCTGAGTTTATTCTCAGTAAAAACTGCACACTGCCAGTGCAGCGGCTCTGTTTCATATCTGGATAGATTCACTGTGAGCTGTAACTTGTTTTCAGTCATAATTTGCTGTTTTTCCAGCACTCCTCTGTTCCCCTCCATCCTGAGCCAGACCAGCGTCACTGAATCAGTCACTTCAGAAACTTCACAGGTAAGAATCACTGACTGATTCCTCAACACACCATCAGGGGGCTCCACTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU60943 lncRNA downstream 14855 5506972 ~ 5508789 (-) True G53514
TU60945 lncRNA downstream 20254 5502395 ~ 5503390 (-) True G53515
TU60934 lncRNA downstream 24649 5491811 ~ 5498995 (-) True G53511
TU60978 lncRNA downstream 46904 5474236 ~ 5476740 (-) True G53545
TU60932 lncRNA downstream 115300 5407998 ~ 5408344 (-) True G53510
TU61005 lncRNA upstream 13202 5552890 ~ 5553101 (-) True G53566
TU61390 lncRNA upstream 45351 5585039 ~ 5596678 (-) True G53916
TU61467 lncRNA upstream 190946 5730634 ~ 5730864 (-) True G53988
TU61476 lncRNA upstream 206887 5746575 ~ 5746788 (-) True G53997
TU61479 lncRNA upstream 212252 5751940 ~ 5752165 (-) True G54000
CI01000009_05513478_05515588.mRNA mRNA downstream 8056 5513269 ~ 5515588 (-) True CI01000009_05513478_05515588
CI01000009_05402729_05410456.mRNA mRNA downstream 113188 5402504 ~ 5410456 (-) True CI01000009_05402729_05410456
CI01000009_05367161_05370504.mRNA mRNA downstream 153140 5365935 ~ 5370504 (-) False CI01000009_05367161_05370504
CI01000009_05362086_05363378.mRNA mRNA downstream 159563 5362042 ~ 5364081 (-) True CI01000009_05362086_05363378
CI01000009_05278137_05361256.mRNA mRNA downstream 162166 5277137 ~ 5361478 (-) True CI01000009_05278137_05361256
CI01000009_05571226_05587885.mRNA mRNA upstream 30813 5570501 ~ 5588015 (-) True CI01000009_05571226_05587885
CI01000009_05675971_05682578.mRNA mRNA upstream 136084 5675772 ~ 5683383 (-) True CI01000009_05675971_05682578
CI01000009_05724421_05725824.mRNA mRNA upstream 184153 5723841 ~ 5725834 (-) True CI01000009_05724421_05725824
CI01000009_05759177_05759509.mRNA mRNA upstream 219311 5758999 ~ 5759770 (-) True CI01000009_05759177_05759509
CI01000009_05784097_05785842.mRNA mRNA upstream 244377 5784065 ~ 5785842 (-) True CI01000009_05784097_05785842
TU60944 other downstream 18396 5502395 ~ 5505248 (-) False G53515
TU60172 other downstream 1292175 4217420 ~ 4231469 (-) True G52828
TU59814 other downstream 2261687 3261203 ~ 3261957 (-) True CI01000009_03261739_03262843
TU59711 other downstream 2624237 2899254 ~ 2899407 (-) True G52415
TU59706 other downstream 2961111 2551724 ~ 2562533 (-) True G52410
TU63500 other upstream 2886133 8425821 ~ 8428012 (-) True G55814
TU64878 other upstream 3318464 8858152 ~ 8860563 (-) True CI01000009_08858198_08860555
TU67286 other upstream 6748529 12288217 ~ 12289518 (-) False G59097
TU67287 other upstream 6748529 12288217 ~ 12288977 (-) True G59097
TU67750 other upstream 8435700 13975388 ~ 13978614 (-) True CI01000009_13975122_13976026

Expression Profile