RNA id: TU61390


Basic Information

Item Value
RNA id TU61390
length 220
lncRNA type sense_over
GC content 0.48
exon number 2
gene id G53916
representative True

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 5585039 ~ 5596678 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CGAAGACCCAGATCACCCGTGTCACGCTCACATGGAGTTGCTCGCGGACAGGCCTGTAACCCTGAGTGATATAGAGCTGGTTTTCTTTACCAAACTCTGATGGGAGAGAGATGACAATGAAGGTGAACTAGGGGAAATGGCGGTCAAGACAGGGTGAATGAAGACGTACACTCATGATCTCCATTGTTCCGATGCTCTGCAGAAATATATTGATCAAAGG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU61005 lncRNA downstream 31938 5552890 ~ 5553101 (-) True G53566
TU60995 lncRNA downstream 38402 5539205 ~ 5546637 (-) True G53556
TU60990 lncRNA downstream 45351 5523644 ~ 5539688 (-) True G53552
TU60943 lncRNA downstream 76250 5506972 ~ 5508789 (-) True G53514
TU60945 lncRNA downstream 81649 5502395 ~ 5503390 (-) True G53515
TU61467 lncRNA upstream 133956 5730634 ~ 5730864 (-) True G53988
TU61476 lncRNA upstream 149897 5746575 ~ 5746788 (-) True G53997
TU61479 lncRNA upstream 155262 5751940 ~ 5752165 (-) True G54000
TU61530 lncRNA upstream 396507 5993185 ~ 5993404 (-) True G54032
TU61570 lncRNA upstream 422368 6019046 ~ 6019356 (-) True G54065
CI01000009_05513478_05515588.mRNA mRNA downstream 69451 5513269 ~ 5515588 (-) True CI01000009_05513478_05515588
CI01000009_05402729_05410456.mRNA mRNA downstream 174583 5402504 ~ 5410456 (-) True CI01000009_05402729_05410456
CI01000009_05367161_05370504.mRNA mRNA downstream 214535 5365935 ~ 5370504 (-) False CI01000009_05367161_05370504
CI01000009_05362086_05363378.mRNA mRNA downstream 220958 5362042 ~ 5364081 (-) True CI01000009_05362086_05363378
CI01000009_05278137_05361256.mRNA mRNA downstream 223561 5277137 ~ 5361478 (-) True CI01000009_05278137_05361256
CI01000009_05675971_05682578.mRNA mRNA upstream 79094 5675772 ~ 5683383 (-) True CI01000009_05675971_05682578
CI01000009_05724421_05725824.mRNA mRNA upstream 127163 5723841 ~ 5725834 (-) True CI01000009_05724421_05725824
CI01000009_05759177_05759509.mRNA mRNA upstream 162321 5758999 ~ 5759770 (-) True CI01000009_05759177_05759509
CI01000009_05784097_05785842.mRNA mRNA upstream 187387 5784065 ~ 5785842 (-) True CI01000009_05784097_05785842
CI01000009_05798886_05836104.mRNA mRNA upstream 201204 5797882 ~ 5838430 (-) True CI01000009_05798886_05836104
TU60944 other downstream 79791 5502395 ~ 5505248 (-) False G53515
TU60172 other downstream 1353570 4217420 ~ 4231469 (-) True G52828
TU59814 other downstream 2323082 3261203 ~ 3261957 (-) True CI01000009_03261739_03262843
TU59711 other downstream 2685632 2899254 ~ 2899407 (-) True G52415
TU59706 other downstream 3022506 2551724 ~ 2562533 (-) True G52410
TU63500 other upstream 2829143 8425821 ~ 8428012 (-) True G55814
TU64878 other upstream 3261474 8858152 ~ 8860563 (-) True CI01000009_08858198_08860555
TU67286 other upstream 6691539 12288217 ~ 12289518 (-) False G59097
TU67287 other upstream 6691539 12288217 ~ 12288977 (-) True G59097
TU67750 other upstream 8378710 13975388 ~ 13978614 (-) True CI01000009_13975122_13976026

Expression Profile