RNA id: TU61467


Basic Information

Item Value
RNA id TU61467
length 231
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G53988
representative True

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 5730634 ~ 5730864 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CGATGACAATGTGAATTTCAATTACCAGCATCAGCTATAATGGAGCGAAGCTGATGGAGAAAATCTCACTGGAAGACATTTACAAGGCTGTGAGAATGTGCGCTAGAAGTACCTTTTTCTTTCACATAATTACTCTCTAATTAACCATTAGTTATTCGATTAGCCCTTTTAATCCTTGAGTCATGGGTACGAGTTTCTAAATGGTGGCTTAGTCATTGGCAGCCCTGTGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU61390 lncRNA downstream 133956 5585039 ~ 5596678 (-) True G53916
TU61005 lncRNA downstream 177533 5552890 ~ 5553101 (-) True G53566
TU60995 lncRNA downstream 183997 5539205 ~ 5546637 (-) True G53556
TU60990 lncRNA downstream 190946 5523644 ~ 5539688 (-) True G53552
TU60943 lncRNA downstream 221845 5506972 ~ 5508789 (-) True G53514
TU61476 lncRNA upstream 15711 5746575 ~ 5746788 (-) True G53997
TU61479 lncRNA upstream 21076 5751940 ~ 5752165 (-) True G54000
TU61530 lncRNA upstream 262321 5993185 ~ 5993404 (-) True G54032
TU61570 lncRNA upstream 288182 6019046 ~ 6019356 (-) True G54065
TU61573 lncRNA upstream 291749 6022613 ~ 6022827 (-) True G54068
CI01000009_05724421_05725824.mRNA mRNA downstream 4800 5723841 ~ 5725834 (-) True CI01000009_05724421_05725824
CI01000009_05675971_05682578.mRNA mRNA downstream 47251 5675772 ~ 5683383 (-) True CI01000009_05675971_05682578
CI01000009_05571226_05587885.mRNA mRNA downstream 142619 5570501 ~ 5588015 (-) True CI01000009_05571226_05587885
CI01000009_05513478_05515588.mRNA mRNA downstream 215046 5513269 ~ 5515588 (-) True CI01000009_05513478_05515588
CI01000009_05402729_05410456.mRNA mRNA downstream 320178 5402504 ~ 5410456 (-) True CI01000009_05402729_05410456
CI01000009_05759177_05759509.mRNA mRNA upstream 28135 5758999 ~ 5759770 (-) True CI01000009_05759177_05759509
CI01000009_05784097_05785842.mRNA mRNA upstream 53201 5784065 ~ 5785842 (-) True CI01000009_05784097_05785842
CI01000009_05798886_05836104.mRNA mRNA upstream 67018 5797882 ~ 5838430 (-) True CI01000009_05798886_05836104
CI01000009_05844758_05855489.mRNA mRNA upstream 113264 5844128 ~ 5855944 (-) True CI01000009_05844758_05855489
CI01000009_05949578_05961385.mRNA mRNA upstream 218714 5949578 ~ 5961385 (-) True CI01000009_05949578_05961385
TU60944 other downstream 225386 5502395 ~ 5505248 (-) False G53515
TU60172 other downstream 1499165 4217420 ~ 4231469 (-) True G52828
TU59814 other downstream 2468677 3261203 ~ 3261957 (-) True CI01000009_03261739_03262843
TU59711 other downstream 2831227 2899254 ~ 2899407 (-) True G52415
TU59706 other downstream 3168101 2551724 ~ 2562533 (-) True G52410
TU63500 other upstream 2694957 8425821 ~ 8428012 (-) True G55814
TU64878 other upstream 3127288 8858152 ~ 8860563 (-) True CI01000009_08858198_08860555
TU67286 other upstream 6557353 12288217 ~ 12289518 (-) False G59097
TU67287 other upstream 6557353 12288217 ~ 12288977 (-) True G59097
TU67750 other upstream 8244524 13975388 ~ 13978614 (-) True CI01000009_13975122_13976026

Expression Profile