RNA id: TU61570


Basic Information

Item Value
RNA id TU61570
length 311
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G54065
representative True

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 6019046 ~ 6019356 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TATAACTTAGAGAACAAAATTTTCAGTTTTACTCAAATTAGGGTGATGCAAAAATGAGTACACCCCACTGAAAGTCTCTGGAGCAAAGCTTAATTTTAGACTACAAATGTCTAATTTAACAAGAATTACACAGGTGTCCAGCAGACAGTTGACTATAAAAAGGTGTTAAAACCCCTTCCCATTTCATGCTGTCAGCAATGGCACCACATGGAAGAGAAATGTCACAAGATCTGAGAAAGAAAATAATTTCTTTACACCAGAAAGGTGAAGGCTACAAGAACATCAGCAAAGCTTTACTTATCAGTCAGAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU61530 lncRNA downstream 25642 5993185 ~ 5993404 (-) True G54032
TU61479 lncRNA downstream 266881 5751940 ~ 5752165 (-) True G54000
TU61476 lncRNA downstream 272258 5746575 ~ 5746788 (-) True G53997
TU61467 lncRNA downstream 288182 5730634 ~ 5730864 (-) True G53988
TU61390 lncRNA downstream 422368 5585039 ~ 5596678 (-) True G53916
TU61573 lncRNA upstream 3257 6022613 ~ 6022827 (-) True G54068
TU61582 lncRNA upstream 22102 6041458 ~ 6041667 (-) True G54077
TU61595 lncRNA upstream 34828 6064021 ~ 6064255 (-) True G54089
TU61650 lncRNA upstream 185055 6204411 ~ 6204799 (-) True G54137
TU61677 lncRNA upstream 446618 6465974 ~ 6530279 (-) True G54156
CI01000009_05994558_06000514.mRNA mRNA downstream 18532 5994558 ~ 6000514 (-) True CI01000009_05994558_06000514
CI01000009_05977117_05981366.mRNA mRNA downstream 36348 5976113 ~ 5982698 (-) True CI01000009_05977117_05981366
CI01000009_05949578_05961385.mRNA mRNA downstream 57661 5949578 ~ 5961385 (-) True CI01000009_05949578_05961385
CI01000009_05844758_05855489.mRNA mRNA downstream 163102 5844128 ~ 5855944 (-) True CI01000009_05844758_05855489
CI01000009_05798886_05836104.mRNA mRNA downstream 180616 5797882 ~ 5838430 (-) True CI01000009_05798886_05836104
CI01000009_06046712_06060022.mRNA mRNA upstream 26518 6045874 ~ 6060442 (-) False CI01000009_06046712_06060022
CI01000009_06072320_06072613.mRNA mRNA upstream 52817 6072173 ~ 6074382 (-) True CI01000009_06072320_06072613
CI01000009_06124385_06127298.mRNA mRNA upstream 104430 6123786 ~ 6128578 (-) True CI01000009_06124385_06127298
CI01000009_06214501_06218695.mRNA mRNA upstream 194939 6214295 ~ 6218832 (-) True CI01000009_06214501_06218695
CI01000009_06228655_06235149.mRNA mRNA upstream 208322 6227678 ~ 6236617 (-) True CI01000009_06228655_06235149
TU60944 other downstream 513798 5502395 ~ 5505248 (-) False G53515
TU60172 other downstream 1787577 4217420 ~ 4231469 (-) True G52828
TU59814 other downstream 2757089 3261203 ~ 3261957 (-) True CI01000009_03261739_03262843
TU59711 other downstream 3119639 2899254 ~ 2899407 (-) True G52415
TU59706 other downstream 3456513 2551724 ~ 2562533 (-) True G52410
TU63500 other upstream 2406465 8425821 ~ 8428012 (-) True G55814
TU64878 other upstream 2838796 8858152 ~ 8860563 (-) True CI01000009_08858198_08860555
TU67286 other upstream 6268861 12288217 ~ 12289518 (-) False G59097
TU67287 other upstream 6268861 12288217 ~ 12288977 (-) True G59097
TU67750 other upstream 7956032 13975388 ~ 13978614 (-) True CI01000009_13975122_13976026

Expression Profile