RNA id: TU61650


Basic Information

Item Value
RNA id TU61650
length 389
lncRNA type inter_gene
GC content 0.31
exon number 1
gene id G54137
representative True

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 6204411 ~ 6204799 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CAGAAAGCTCTCAGATTTCATCAAAAAGATCTTTGTTTGCATTCTAAAGATGAACGAAAGTCTTGCGGGTTTGTAACGACATGAGGGTAATTATTGACAGAATTTTCATTTTTGGGTGAACTAATTTAAATTGTATGAATGTCATTGCATTAAGTAGTCATTGTTTTATTATTTTAAAGAAACATTTCGCAAACAAAGCCTTTCAAAATGGAAGTTTGTTTGGTTTTAAATGTTAGATAGGGAACACAGACAACAAATAGTAAAGTCCAGGGCATGTCACATTTTTTACTCAAGTAAATATCTATAAAAAGTCAGTTTTGTCTAAAAAAAGTAAACCTTGACAAAGGCTACTAGCTGAAACGTTGGTAAATAAATAGCCTATGCTTAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU61595 lncRNA downstream 140156 6064021 ~ 6064255 (-) True G54089
TU61582 lncRNA downstream 162744 6041458 ~ 6041667 (-) True G54077
TU61573 lncRNA downstream 181584 6022613 ~ 6022827 (-) True G54068
TU61570 lncRNA downstream 185055 6019046 ~ 6019356 (-) True G54065
TU61530 lncRNA downstream 211007 5993185 ~ 5993404 (-) True G54032
TU61677 lncRNA upstream 261175 6465974 ~ 6530279 (-) True G54156
TU61914 lncRNA upstream 330295 6535094 ~ 6535317 (-) True G54387
TU61938 lncRNA upstream 364826 6569625 ~ 6569834 (-) True G54411
TU61944 lncRNA upstream 369111 6573910 ~ 6574168 (-) True G54417
TU62017 lncRNA upstream 428002 6632801 ~ 6633000 (-) True G54488
CI01000009_06124385_06127298.mRNA mRNA downstream 75833 6123786 ~ 6128578 (-) True CI01000009_06124385_06127298
CI01000009_06072320_06072613.mRNA mRNA downstream 130029 6072173 ~ 6074382 (-) True CI01000009_06072320_06072613
CI01000009_06046712_06060022.mRNA mRNA downstream 143969 6045874 ~ 6060442 (-) False CI01000009_06046712_06060022
CI01000009_05994558_06000514.mRNA mRNA downstream 203897 5994558 ~ 6000514 (-) True CI01000009_05994558_06000514
CI01000009_05977117_05981366.mRNA mRNA downstream 221713 5976113 ~ 5982698 (-) True CI01000009_05977117_05981366
CI01000009_06214501_06218695.mRNA mRNA upstream 9496 6214295 ~ 6218832 (-) True CI01000009_06214501_06218695
CI01000009_06228655_06235149.mRNA mRNA upstream 22879 6227678 ~ 6236617 (-) True CI01000009_06228655_06235149
CI01000009_06237366_06242607.mRNA mRNA upstream 32359 6237158 ~ 6242627 (-) True CI01000009_06237366_06242607
CI01000009_06246303_06248176.mRNA mRNA upstream 40771 6245570 ~ 6248176 (-) True CI01000009_06246303_06248176
CI01000009_06250463_06251001.mRNA mRNA upstream 45487 6250286 ~ 6251001 (-) True CI01000009_06250463_06251001
TU60944 other downstream 699163 5502395 ~ 5505248 (-) False G53515
TU60172 other downstream 1972942 4217420 ~ 4231469 (-) True G52828
TU59814 other downstream 2942454 3261203 ~ 3261957 (-) True CI01000009_03261739_03262843
TU59711 other downstream 3305004 2899254 ~ 2899407 (-) True G52415
TU59706 other downstream 3641878 2551724 ~ 2562533 (-) True G52410
TU63500 other upstream 2221022 8425821 ~ 8428012 (-) True G55814
TU64878 other upstream 2653353 8858152 ~ 8860563 (-) True CI01000009_08858198_08860555
TU67286 other upstream 6083418 12288217 ~ 12289518 (-) False G59097
TU67287 other upstream 6083418 12288217 ~ 12288977 (-) True G59097
TU67750 other upstream 7770589 13975388 ~ 13978614 (-) True CI01000009_13975122_13976026

Expression Profile