RNA id: TU61677


Basic Information

Item Value
RNA id TU61677
length 413
lncRNA type inter_gene
GC content 0.51
exon number 4
gene id G54156
representative True

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 6465974 ~ 6530279 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GAAGAAATACCCCTGATTCCATCCAGATTGAAGCTGCTTCACCTGTCTGGGAAAAGGTCACCTGACCACCCACCGGCAAGTCAAGACAGACCCCGCTGCCACACCAGATGATAGACAGTGACTCCTCTATTGACTAACCGGGCCTACACAGGCCGCTCAAATCCGGCCTGAATTCCCAAGTCCTGCTGCGATGTAAATCAGGTCTTTTTTTGCCTGTCATGGATACGGGATAAGCTCGGCCTGCAGCTGCAGAAGTTTTACACACTGCCCCGAGAGATGGTCGAGTCAGAAGTTTGACGGATGTTCTATCACATCAAATAAAAACCAGGGAACGCAAATAATAAAGGAAGTGTGGACGGTGCAGGTGGCAGTGCGTATGACGTACACTATCCGCACCATATGCTAACCGGGCC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU61650 lncRNA downstream 261175 6204411 ~ 6204799 (-) True G54137
TU61595 lncRNA downstream 401719 6064021 ~ 6064255 (-) True G54089
TU61582 lncRNA downstream 424307 6041458 ~ 6041667 (-) True G54077
TU61573 lncRNA downstream 443147 6022613 ~ 6022827 (-) True G54068
TU61570 lncRNA downstream 446618 6019046 ~ 6019356 (-) True G54065
TU61914 lncRNA upstream 4815 6535094 ~ 6535317 (-) True G54387
TU61938 lncRNA upstream 39346 6569625 ~ 6569834 (-) True G54411
TU61944 lncRNA upstream 43631 6573910 ~ 6574168 (-) True G54417
TU62017 lncRNA upstream 102522 6632801 ~ 6633000 (-) True G54488
TU62028 lncRNA upstream 117808 6648087 ~ 6648291 (-) True G54499
CI01000009_06253421_06255264.mRNA mRNA downstream 210028 6253421 ~ 6255946 (-) True CI01000009_06253421_06255264
CI01000009_06250463_06251001.mRNA mRNA downstream 214973 6250286 ~ 6251001 (-) True CI01000009_06250463_06251001
CI01000009_06246303_06248176.mRNA mRNA downstream 217798 6245570 ~ 6248176 (-) True CI01000009_06246303_06248176
CI01000009_06237366_06242607.mRNA mRNA downstream 223347 6237158 ~ 6242627 (-) True CI01000009_06237366_06242607
CI01000009_06228655_06235149.mRNA mRNA downstream 229357 6227678 ~ 6236617 (-) True CI01000009_06228655_06235149
CI01000009_06891877_06908223.mRNA mRNA upstream 360962 6891241 ~ 6908223 (-) True CI01000009_06891877_06908223
CI01000009_06913437_06917631.mRNA mRNA upstream 382191 6912470 ~ 6917631 (-) True CI01000009_06913437_06917631
CI01000009_07020336_07047155.mRNA mRNA upstream 490036 7020315 ~ 7048177 (-) True CI01000009_07020336_07047155
CI01000009_07064060_07084764.mRNA mRNA upstream 533518 7063797 ~ 7085218 (-) True CI01000009_07064060_07084764
CI01000009_07224625_07229839.mRNA mRNA upstream 694037 7224316 ~ 7230651 (-) False CI01000009_07224625_07229839
TU60944 other downstream 960726 5502395 ~ 5505248 (-) False G53515
TU60172 other downstream 2234505 4217420 ~ 4231469 (-) True G52828
TU59814 other downstream 3204017 3261203 ~ 3261957 (-) True CI01000009_03261739_03262843
TU59711 other downstream 3566567 2899254 ~ 2899407 (-) True G52415
TU59706 other downstream 3903441 2551724 ~ 2562533 (-) True G52410
TU63500 other upstream 1895542 8425821 ~ 8428012 (-) True G55814
TU64878 other upstream 2327873 8858152 ~ 8860563 (-) True CI01000009_08858198_08860555
TU67286 other upstream 5757938 12288217 ~ 12289518 (-) False G59097
TU67287 other upstream 5757938 12288217 ~ 12288977 (-) True G59097
TU67750 other upstream 7445109 13975388 ~ 13978614 (-) True CI01000009_13975122_13976026

Expression Profile