RNA id: TU61377


Basic Information

Item Value
RNA id TU61377
length 427
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G53903
representative True

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 6576716 ~ 6577142 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TATAATTGTATAAAATAATCCAGAAAAAAGCACAAATATGGCTGAGATGCCAAATTCAGCGGCTGGAATTTAGCTGAGGTAAAGTGACGGCTCACAGACAGCAGCGGCAATCTACCTGTCACTCAAGTGACCACACCCTTAATTATGCAGAACTTTAAGGCTTAGTATAATTTAAACGGATGAGTTATAAAAAAATTCACCCCCCTCAGAGTTGTCATGAAGGGCAAAATTAGCAGTATAGACCAAAACCACAATTTGTACCAAGCTGTAAACATGTTTTTTTCTGCTGTAAATTTGGCCGTTTTAACATGGGACTCAATGAGATTCTGCTCTCTTTTGGAGCCTGTCCCTAGCGGCCAGTCGATGAATTGCAGTTTAAGTCACTTCCATATTGGCTTCACGAGAAACTGGGGGAGGTTGCCGCTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU61375 lncRNA upstream 6103 6570411 ~ 6570613 (+) True G53901
TU61364 lncRNA upstream 39333 6537149 ~ 6537383 (+) True G53890
TU61360 lncRNA upstream 46447 6519899 ~ 6530269 (+) True G53886
TU61126 lncRNA upstream 332348 6215668 ~ 6244368 (+) True G53669
TU61118 lncRNA upstream 361256 6215073 ~ 6215460 (+) True G53661
TU61960 lncRNA downstream 55402 6632544 ~ 6632778 (+) True G54433
TU62163 lncRNA downstream 228165 6805307 ~ 6913596 (+) False G54627
TU62164 lncRNA downstream 228165 6805307 ~ 6913596 (+) False G54627
TU62168 lncRNA downstream 250325 6827467 ~ 6913596 (+) False G54627
TU62162 lncRNA downstream 308221 6885363 ~ 6913596 (+) False G54627
CI01000009_06212264_06213131.mRNA mRNA upstream 362901 6212264 ~ 6213815 (+) True CI01000009_06212264_06213131
CI01000009_06205817_06207701.mRNA mRNA upstream 369005 6205817 ~ 6207711 (+) True CI01000009_06205817_06207701
CI01000009_06195742_06204011.mRNA mRNA upstream 372367 6195742 ~ 6204349 (+) True CI01000009_06195742_06204011
CI01000009_06130188_06193279.mRNA mRNA upstream 383312 6130064 ~ 6193404 (+) True CI01000009_06130188_06193279
CI01000009_06002120_06017019.mRNA mRNA upstream 558934 6002120 ~ 6017782 (+) True CI01000009_06002120_06017019
CI01000009_06943591_06952628.mRNA mRNA downstream 364482 6941624 ~ 6953067 (+) True CI01000009_06943591_06952628
CI01000009_06975071_07009147.mRNA mRNA downstream 397929 6975071 ~ 7009417 (+) True CI01000009_06975071_07009147
CI01000009_07051811_07054331.mRNA mRNA downstream 473576 7050718 ~ 7054625 (+) True CI01000009_07051811_07054331
CI01000009_07091022_07092696.mRNA mRNA downstream 513776 7090918 ~ 7092801 (+) True CI01000009_07091022_07092696
CI01000009_07101768_07105835.mRNA mRNA downstream 524127 7101269 ~ 7106009 (+) True CI01000009_07101768_07105835
TU61103 other upstream 328324 6245564 ~ 6248392 (+) True G53651
TU61110 other upstream 643915 5860302 ~ 5860756 (+) True G53655
TU60796 other upstream 1037662 5522242 ~ 5522356 (+) False G53388
TU60791 other upstream 1037662 5535245 ~ 5538095 (+) False G53388
TU58748 other upstream 3368792 3202905 ~ 3207924 (+) True CI01000009_03202999_03207060
TU63847 other downstream 2552158 9129300 ~ 9130286 (+) True G56100
TU64139 other downstream 3276217 9853359 ~ 9853515 (+) True G56323
TU65813 other downstream 5183644 11760786 ~ 11760858 (+) True G57782
TU65844 other downstream 5356800 11933942 ~ 11935251 (+) False G57811
TU65845 other downstream 5356800 11933942 ~ 11935251 (+) False G57811

Expression Profile