RNA id: TU61960


Basic Information

Item Value
RNA id TU61960
length 235
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G54433
representative True

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 6632544 ~ 6632778 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGAGGTTCTCATTTTTAAGTTTCCTTAAGAGGTTTTTCTTTTGACTTGTTCAGCTCTTTAATAGAAATCTTTTACAATGTGACCATTATGTCTTTTTTCCAGCTGCCTGTAATTGTATTTTAAGCCCTCATTATTCCAACCCAGTCGCACTTCAAGGTTTGAGTGTGATAAAAAGGTATGTTAATTAAAACAGCGCTATCCCAAATTCAAGCTGTCTTTATCATTTTCTTTTCTC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU61377 lncRNA upstream 55402 6576716 ~ 6577142 (+) True G53903
TU61375 lncRNA upstream 61931 6570411 ~ 6570613 (+) True G53901
TU61364 lncRNA upstream 95161 6537149 ~ 6537383 (+) True G53890
TU61360 lncRNA upstream 102275 6519899 ~ 6530269 (+) True G53886
TU61126 lncRNA upstream 388176 6215668 ~ 6244368 (+) True G53669
TU62163 lncRNA downstream 172529 6805307 ~ 6913596 (+) False G54627
TU62164 lncRNA downstream 172529 6805307 ~ 6913596 (+) False G54627
TU62168 lncRNA downstream 194689 6827467 ~ 6913596 (+) False G54627
TU62162 lncRNA downstream 252585 6885363 ~ 6913596 (+) False G54627
TU62160 lncRNA downstream 263343 6896121 ~ 6940792 (+) False G54626
CI01000009_06212264_06213131.mRNA mRNA upstream 418729 6212264 ~ 6213815 (+) True CI01000009_06212264_06213131
CI01000009_06205817_06207701.mRNA mRNA upstream 424833 6205817 ~ 6207711 (+) True CI01000009_06205817_06207701
CI01000009_06195742_06204011.mRNA mRNA upstream 428195 6195742 ~ 6204349 (+) True CI01000009_06195742_06204011
CI01000009_06130188_06193279.mRNA mRNA upstream 439140 6130064 ~ 6193404 (+) True CI01000009_06130188_06193279
CI01000009_06002120_06017019.mRNA mRNA upstream 614762 6002120 ~ 6017782 (+) True CI01000009_06002120_06017019
CI01000009_06943591_06952628.mRNA mRNA downstream 308846 6941624 ~ 6953067 (+) True CI01000009_06943591_06952628
CI01000009_06975071_07009147.mRNA mRNA downstream 342293 6975071 ~ 7009417 (+) True CI01000009_06975071_07009147
CI01000009_07051811_07054331.mRNA mRNA downstream 417940 7050718 ~ 7054625 (+) True CI01000009_07051811_07054331
CI01000009_07091022_07092696.mRNA mRNA downstream 458140 7090918 ~ 7092801 (+) True CI01000009_07091022_07092696
CI01000009_07101768_07105835.mRNA mRNA downstream 468491 7101269 ~ 7106009 (+) True CI01000009_07101768_07105835
TU61103 other upstream 384152 6245564 ~ 6248392 (+) True G53651
TU61110 other upstream 699743 5860302 ~ 5860756 (+) True G53655
TU60796 other upstream 1093490 5522242 ~ 5522356 (+) False G53388
TU60791 other upstream 1093490 5535245 ~ 5538095 (+) False G53388
TU58748 other upstream 3424620 3202905 ~ 3207924 (+) True CI01000009_03202999_03207060
TU63847 other downstream 2496522 9129300 ~ 9130286 (+) True G56100
TU64139 other downstream 3220581 9853359 ~ 9853515 (+) True G56323
TU65813 other downstream 5128008 11760786 ~ 11760858 (+) True G57782
TU65844 other downstream 5301164 11933942 ~ 11935251 (+) False G57811
TU65845 other downstream 5301164 11933942 ~ 11935251 (+) False G57811

Expression Profile