RNA id: TU62017


Basic Information

Item Value
RNA id TU62017
length 200
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G54488
representative True

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 6632801 ~ 6633000 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATTCCGTCCAGCTGTGCTGCTTCCTTCAAAGCCAGACGAGCATGGAATTATGGAACCCTGCCGACACCACGCTTCTTCCTCCCACCTGTTCAACTCGCTTTCTCACTTGGTTTCTCTCTTTTTTCCATTTTACAGCATACAGAGGCTGTTTCAAACTGCAAACAACTTTCCCTGATGAGGAAAAAAGTGGTAAAAATGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU61944 lncRNA downstream 58633 6573910 ~ 6574168 (-) True G54417
TU61938 lncRNA downstream 62967 6569625 ~ 6569834 (-) True G54411
TU61914 lncRNA downstream 97484 6535094 ~ 6535317 (-) True G54387
TU61677 lncRNA downstream 102522 6465974 ~ 6530279 (-) True G54156
TU61650 lncRNA downstream 428002 6204411 ~ 6204799 (-) True G54137
TU62028 lncRNA upstream 15087 6648087 ~ 6648291 (-) True G54499
TU62398 lncRNA upstream 318207 6951207 ~ 6951423 (-) True G54836
TU62401 lncRNA upstream 319942 6952942 ~ 6953189 (-) True G54839
TU62411 lncRNA upstream 328953 6961953 ~ 6962172 (-) True G54849
TU62444 lncRNA upstream 483374 7116374 ~ 7116639 (-) True G54877
CI01000009_06253421_06255264.mRNA mRNA downstream 376855 6253421 ~ 6255946 (-) True CI01000009_06253421_06255264
CI01000009_06250463_06251001.mRNA mRNA downstream 381800 6250286 ~ 6251001 (-) True CI01000009_06250463_06251001
CI01000009_06246303_06248176.mRNA mRNA downstream 384625 6245570 ~ 6248176 (-) True CI01000009_06246303_06248176
CI01000009_06237366_06242607.mRNA mRNA downstream 390174 6237158 ~ 6242627 (-) True CI01000009_06237366_06242607
CI01000009_06228655_06235149.mRNA mRNA downstream 396184 6227678 ~ 6236617 (-) True CI01000009_06228655_06235149
CI01000009_06891877_06908223.mRNA mRNA upstream 258241 6891241 ~ 6908223 (-) True CI01000009_06891877_06908223
CI01000009_06913437_06917631.mRNA mRNA upstream 279470 6912470 ~ 6917631 (-) True CI01000009_06913437_06917631
CI01000009_07020336_07047155.mRNA mRNA upstream 387315 7020315 ~ 7048177 (-) True CI01000009_07020336_07047155
CI01000009_07064060_07084764.mRNA mRNA upstream 430797 7063797 ~ 7085218 (-) True CI01000009_07064060_07084764
CI01000009_07224625_07229839.mRNA mRNA upstream 591316 7224316 ~ 7230651 (-) False CI01000009_07224625_07229839
TU60944 other downstream 1127553 5502395 ~ 5505248 (-) False G53515
TU60172 other downstream 2401332 4217420 ~ 4231469 (-) True G52828
TU59814 other downstream 3370844 3261203 ~ 3261957 (-) True CI01000009_03261739_03262843
TU59711 other downstream 3733394 2899254 ~ 2899407 (-) True G52415
TU59706 other downstream 4070268 2551724 ~ 2562533 (-) True G52410
TU63500 other upstream 1792821 8425821 ~ 8428012 (-) True G55814
TU64878 other upstream 2225152 8858152 ~ 8860563 (-) True CI01000009_08858198_08860555
TU67286 other upstream 5655217 12288217 ~ 12289518 (-) False G59097
TU67287 other upstream 5655217 12288217 ~ 12288977 (-) True G59097
TU67750 other upstream 7342388 13975388 ~ 13978614 (-) True CI01000009_13975122_13976026

Expression Profile