RNA id: TU62028


Basic Information

Item Value
RNA id TU62028
length 205
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G54499
representative True

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 6648087 ~ 6648291 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGAATCTTTTGTTCCGAATCAGTTGTTCGGAGCGTGTATCAAACTGCCAATGTCACGCCCCCCAGTGGTGAACCATTGAAATCTCAAAACACTTATGATGTAACGAAGCCTTGTTTACTGAAATCACATGACTTTGGCAGTTTGATAGTGCTCCGAACCACTGATTCAAAACAAAAAATTTGAAGCTTCATGAAGCAGTGTTTTG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU62017 lncRNA downstream 15087 6632801 ~ 6633000 (-) True G54488
TU61944 lncRNA downstream 73919 6573910 ~ 6574168 (-) True G54417
TU61938 lncRNA downstream 78253 6569625 ~ 6569834 (-) True G54411
TU61914 lncRNA downstream 112770 6535094 ~ 6535317 (-) True G54387
TU61677 lncRNA downstream 117808 6465974 ~ 6530279 (-) True G54156
TU62398 lncRNA upstream 302916 6951207 ~ 6951423 (-) True G54836
TU62401 lncRNA upstream 304651 6952942 ~ 6953189 (-) True G54839
TU62411 lncRNA upstream 313662 6961953 ~ 6962172 (-) True G54849
TU62444 lncRNA upstream 468083 7116374 ~ 7116639 (-) True G54877
TU62445 lncRNA upstream 470237 7118528 ~ 7118767 (-) True G54878
CI01000009_06253421_06255264.mRNA mRNA downstream 392141 6253421 ~ 6255946 (-) True CI01000009_06253421_06255264
CI01000009_06250463_06251001.mRNA mRNA downstream 397086 6250286 ~ 6251001 (-) True CI01000009_06250463_06251001
CI01000009_06246303_06248176.mRNA mRNA downstream 399911 6245570 ~ 6248176 (-) True CI01000009_06246303_06248176
CI01000009_06237366_06242607.mRNA mRNA downstream 405460 6237158 ~ 6242627 (-) True CI01000009_06237366_06242607
CI01000009_06228655_06235149.mRNA mRNA downstream 411470 6227678 ~ 6236617 (-) True CI01000009_06228655_06235149
CI01000009_06891877_06908223.mRNA mRNA upstream 242950 6891241 ~ 6908223 (-) True CI01000009_06891877_06908223
CI01000009_06913437_06917631.mRNA mRNA upstream 264179 6912470 ~ 6917631 (-) True CI01000009_06913437_06917631
CI01000009_07020336_07047155.mRNA mRNA upstream 372024 7020315 ~ 7048177 (-) True CI01000009_07020336_07047155
CI01000009_07064060_07084764.mRNA mRNA upstream 415506 7063797 ~ 7085218 (-) True CI01000009_07064060_07084764
CI01000009_07224625_07229839.mRNA mRNA upstream 576025 7224316 ~ 7230651 (-) False CI01000009_07224625_07229839
TU60944 other downstream 1142839 5502395 ~ 5505248 (-) False G53515
TU60172 other downstream 2416618 4217420 ~ 4231469 (-) True G52828
TU59814 other downstream 3386130 3261203 ~ 3261957 (-) True CI01000009_03261739_03262843
TU59711 other downstream 3748680 2899254 ~ 2899407 (-) True G52415
TU59706 other downstream 4085554 2551724 ~ 2562533 (-) True G52410
TU63500 other upstream 1777530 8425821 ~ 8428012 (-) True G55814
TU64878 other upstream 2209861 8858152 ~ 8860563 (-) True CI01000009_08858198_08860555
TU67286 other upstream 5639926 12288217 ~ 12289518 (-) False G59097
TU67287 other upstream 5639926 12288217 ~ 12288977 (-) True G59097
TU67750 other upstream 7327097 13975388 ~ 13978614 (-) True CI01000009_13975122_13976026

Expression Profile