RNA id: TU62239


Basic Information

Item Value
RNA id TU62239
length 219
lncRNA type intronic
GC content 0.42
exon number 1
gene id G54687
representative True

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 6945823 ~ 6946041 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TAAATTTTAGAACTGTGGTTTCATTCTGTTCAGACATTGGCCTGGGAGAAAAAGTGAAAAAGACGAAGAGAGAGCAAGATCAGGGTTTGATTGCTGAGAGGTAACATCCACAGGTTAAGCTCCGGCCCTGTAACATAACAGACCAAACCTAATCATGGCGTGATCATCTGTTTTTAAAAGCACAACAGCACCGTTACAGATTTCAATCAGCACTTGGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU62160 lncRNA upstream 5031 6896121 ~ 6940792 (+) False G54626
TU62158 lncRNA upstream 5031 6915187 ~ 6940792 (+) False G54626
TU62156 lncRNA upstream 25947 6915187 ~ 6919876 (+) False G54626
TU62159 lncRNA upstream 25947 6915187 ~ 6919876 (+) True G54626
TU62163 lncRNA upstream 32227 6805307 ~ 6913596 (+) False G54627
TU62246 lncRNA downstream 11678 6957719 ~ 6957928 (+) True G54694
TU62178 lncRNA downstream 124710 7070751 ~ 7110641 (+) True G54632
TU62180 lncRNA downstream 164310 7110351 ~ 7115443 (+) True CI01000009_07111833_07115320
TU62305 lncRNA downstream 174454 7120495 ~ 7120779 (+) True G54752
TU62332 lncRNA downstream 210840 7156881 ~ 7157158 (+) True G54779
CI01000009_06212264_06213131.mRNA mRNA upstream 732008 6212264 ~ 6213815 (+) True CI01000009_06212264_06213131
CI01000009_06205817_06207701.mRNA mRNA upstream 738112 6205817 ~ 6207711 (+) True CI01000009_06205817_06207701
CI01000009_06195742_06204011.mRNA mRNA upstream 741474 6195742 ~ 6204349 (+) True CI01000009_06195742_06204011
CI01000009_06130188_06193279.mRNA mRNA upstream 752419 6130064 ~ 6193404 (+) True CI01000009_06130188_06193279
CI01000009_06002120_06017019.mRNA mRNA upstream 928041 6002120 ~ 6017782 (+) True CI01000009_06002120_06017019
CI01000009_06975071_07009147.mRNA mRNA downstream 29030 6975071 ~ 7009417 (+) True CI01000009_06975071_07009147
CI01000009_07051811_07054331.mRNA mRNA downstream 104677 7050718 ~ 7054625 (+) True CI01000009_07051811_07054331
CI01000009_07091022_07092696.mRNA mRNA downstream 144877 7090918 ~ 7092801 (+) True CI01000009_07091022_07092696
CI01000009_07101768_07105835.mRNA mRNA downstream 155228 7101269 ~ 7106009 (+) True CI01000009_07101768_07105835
CI01000009_07111833_07115320.mRNA mRNA downstream 165681 7111722 ~ 7115422 (+) False CI01000009_07111833_07115320
TU61103 other upstream 697431 6245564 ~ 6248392 (+) True G53651
TU61110 other upstream 1013022 5860302 ~ 5860756 (+) True G53655
TU60796 other upstream 1406769 5522242 ~ 5522356 (+) False G53388
TU60791 other upstream 1406769 5535245 ~ 5538095 (+) False G53388
TU58748 other upstream 3737899 3202905 ~ 3207924 (+) True CI01000009_03202999_03207060
TU63847 other downstream 2183259 9129300 ~ 9130286 (+) True G56100
TU64139 other downstream 2907318 9853359 ~ 9853515 (+) True G56323
TU65813 other downstream 4814745 11760786 ~ 11760858 (+) True G57782
TU65844 other downstream 4987901 11933942 ~ 11935251 (+) False G57811
TU65845 other downstream 4987901 11933942 ~ 11935251 (+) False G57811

Expression Profile