RNA id: TU62401


Basic Information

Item Value
RNA id TU62401
length 248
lncRNA type antisense_over
GC content 0.42
exon number 1
gene id G54839
representative True

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 6952942 ~ 6953189 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TAAATATTTAAAACGTGTCCCCATTCCTTTCGTCTCTTGTGAGAGTCAAACACATCAATTTGCACTCAAAAAAGCACAAACAGAGGACTGAAGTGTGTAGAGAAAGAAAACGGCTCCTTTATTTTAACTTCTAAGCGGTTTCACCGCAAATTGAAGCGTGAAGACGACAGCACAATTAGCAGGCGCAGAAGGAGGGATGGGAATGAGCTTGTGAAAAGCCGAGCGAAAGAAAGGCAAAAGGATACAAC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU62398 lncRNA downstream 1519 6951207 ~ 6951423 (-) True G54836
TU62028 lncRNA downstream 304651 6648087 ~ 6648291 (-) True G54499
TU62017 lncRNA downstream 319942 6632801 ~ 6633000 (-) True G54488
TU61944 lncRNA downstream 378774 6573910 ~ 6574168 (-) True G54417
TU61938 lncRNA downstream 383108 6569625 ~ 6569834 (-) True G54411
TU62411 lncRNA upstream 8764 6961953 ~ 6962172 (-) True G54849
TU62444 lncRNA upstream 163185 7116374 ~ 7116639 (-) True G54877
TU62445 lncRNA upstream 165339 7118528 ~ 7118767 (-) True G54878
TU62454 lncRNA upstream 174173 7127362 ~ 7127584 (-) True G54887
TU62467 lncRNA upstream 188540 7141729 ~ 7141964 (-) True G54900
CI01000009_06913437_06917631.mRNA mRNA downstream 35311 6912470 ~ 6917631 (-) True CI01000009_06913437_06917631
CI01000009_06891877_06908223.mRNA mRNA downstream 44719 6891241 ~ 6908223 (-) True CI01000009_06891877_06908223
CI01000009_06253421_06255264.mRNA mRNA downstream 696996 6253421 ~ 6255946 (-) True CI01000009_06253421_06255264
CI01000009_06250463_06251001.mRNA mRNA downstream 701941 6250286 ~ 6251001 (-) True CI01000009_06250463_06251001
CI01000009_06246303_06248176.mRNA mRNA downstream 704766 6245570 ~ 6248176 (-) True CI01000009_06246303_06248176
CI01000009_07020336_07047155.mRNA mRNA upstream 67126 7020315 ~ 7048177 (-) True CI01000009_07020336_07047155
CI01000009_07064060_07084764.mRNA mRNA upstream 110608 7063797 ~ 7085218 (-) True CI01000009_07064060_07084764
CI01000009_07224625_07229839.mRNA mRNA upstream 271127 7224316 ~ 7230651 (-) False CI01000009_07224625_07229839
CI01000009_07383927_07391805.mRNA mRNA upstream 430465 7383654 ~ 7391994 (-) True CI01000009_07383927_07391805
CI01000009_07500752_07541007.mRNA mRNA upstream 547413 7500602 ~ 7541007 (-) True CI01000009_07500752_07541007
TU60944 other downstream 1447694 5502395 ~ 5505248 (-) False G53515
TU60172 other downstream 2721473 4217420 ~ 4231469 (-) True G52828
TU59814 other downstream 3690985 3261203 ~ 3261957 (-) True CI01000009_03261739_03262843
TU59711 other downstream 4053535 2899254 ~ 2899407 (-) True G52415
TU59706 other downstream 4390409 2551724 ~ 2562533 (-) True G52410
TU63500 other upstream 1472632 8425821 ~ 8428012 (-) True G55814
TU64878 other upstream 1904963 8858152 ~ 8860563 (-) True CI01000009_08858198_08860555
TU67286 other upstream 5335028 12288217 ~ 12289518 (-) False G59097
TU67287 other upstream 5335028 12288217 ~ 12288977 (-) True G59097
TU67750 other upstream 7022199 13975388 ~ 13978614 (-) True CI01000009_13975122_13976026

Expression Profile