RNA id: TU62411


Basic Information

Item Value
RNA id TU62411
length 220
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G54849
representative True

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 6961953 ~ 6962172 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTCCAGTAGATTTGTGTCTCACTAAAATCTGCACAATGAGCAAATGTGAACTGGAGAAAAGTTCATGCTGACCAGCAAAGTACACCATTAAAAATCTTCCCTGTAGATTTGAGTTATTAAGTCGGCCTTAAACAATAATTTAGGGCCAGTACAAGAGGTCTCAGAAGTGATAGTAAAGAATTAAATTTTATGGGCAGTTTTTTTGTAGCCTACTGCAAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU62401 lncRNA downstream 8764 6952942 ~ 6953189 (-) True G54839
TU62398 lncRNA downstream 10530 6951207 ~ 6951423 (-) True G54836
TU62028 lncRNA downstream 313662 6648087 ~ 6648291 (-) True G54499
TU62017 lncRNA downstream 328953 6632801 ~ 6633000 (-) True G54488
TU61944 lncRNA downstream 387785 6573910 ~ 6574168 (-) True G54417
TU62444 lncRNA upstream 154202 7116374 ~ 7116639 (-) True G54877
TU62445 lncRNA upstream 156356 7118528 ~ 7118767 (-) True G54878
TU62454 lncRNA upstream 165190 7127362 ~ 7127584 (-) True G54887
TU62467 lncRNA upstream 179557 7141729 ~ 7141964 (-) True G54900
TU62484 lncRNA upstream 194599 7156771 ~ 7157175 (-) True G54917
CI01000009_06913437_06917631.mRNA mRNA downstream 44322 6912470 ~ 6917631 (-) True CI01000009_06913437_06917631
CI01000009_06891877_06908223.mRNA mRNA downstream 53730 6891241 ~ 6908223 (-) True CI01000009_06891877_06908223
CI01000009_06253421_06255264.mRNA mRNA downstream 706007 6253421 ~ 6255946 (-) True CI01000009_06253421_06255264
CI01000009_06250463_06251001.mRNA mRNA downstream 710952 6250286 ~ 6251001 (-) True CI01000009_06250463_06251001
CI01000009_06246303_06248176.mRNA mRNA downstream 713777 6245570 ~ 6248176 (-) True CI01000009_06246303_06248176
CI01000009_07020336_07047155.mRNA mRNA upstream 58143 7020315 ~ 7048177 (-) True CI01000009_07020336_07047155
CI01000009_07064060_07084764.mRNA mRNA upstream 101625 7063797 ~ 7085218 (-) True CI01000009_07064060_07084764
CI01000009_07224625_07229839.mRNA mRNA upstream 262144 7224316 ~ 7230651 (-) False CI01000009_07224625_07229839
CI01000009_07383927_07391805.mRNA mRNA upstream 421482 7383654 ~ 7391994 (-) True CI01000009_07383927_07391805
CI01000009_07500752_07541007.mRNA mRNA upstream 538430 7500602 ~ 7541007 (-) True CI01000009_07500752_07541007
TU60944 other downstream 1456705 5502395 ~ 5505248 (-) False G53515
TU60172 other downstream 2730484 4217420 ~ 4231469 (-) True G52828
TU59814 other downstream 3699996 3261203 ~ 3261957 (-) True CI01000009_03261739_03262843
TU59711 other downstream 4062546 2899254 ~ 2899407 (-) True G52415
TU59706 other downstream 4399420 2551724 ~ 2562533 (-) True G52410
TU63500 other upstream 1463649 8425821 ~ 8428012 (-) True G55814
TU64878 other upstream 1895980 8858152 ~ 8860563 (-) True CI01000009_08858198_08860555
TU67286 other upstream 5326045 12288217 ~ 12289518 (-) False G59097
TU67287 other upstream 5326045 12288217 ~ 12288977 (-) True G59097
TU67750 other upstream 7013216 13975388 ~ 13978614 (-) True CI01000009_13975122_13976026

Expression Profile