RNA id: TU62305


Basic Information

Item Value
RNA id TU62305
length 285
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G54752
representative True

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 7120495 ~ 7120779 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AAACTTCCCAGCACGTTGGGCAAACTGTTTGGTTAAAACAACCCAATCGCTTGGTTAAAACAACTCAATTGCTGGGTTTGTCCATTTTCAACCCAGCATTTTTTAGACTGTATGATCACAAACGCTTATTGATATATAACATAAAATATGTTGTATTTTCAGTGTTACAAGGGCATTAGTGGACATTAGTGTAGACCCGAGATGCCCAAAACAGAACAATTTGGCCCATGAAGACCTTTGATTTGGCCTGCCATGCCAAAGCACAAGGTGGTTTGAATAGGAGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU62180 lncRNA upstream 5052 7110351 ~ 7115443 (+) True CI01000009_07111833_07115320
TU62178 lncRNA upstream 9854 7070751 ~ 7110641 (+) True G54632
TU62246 lncRNA upstream 162567 6957719 ~ 6957928 (+) True G54694
TU62239 lncRNA upstream 174454 6945823 ~ 6946041 (+) True G54687
TU62158 lncRNA upstream 179703 6915187 ~ 6940792 (+) False G54626
TU62332 lncRNA downstream 36102 7156881 ~ 7157158 (+) True G54779
TU62514 lncRNA downstream 80911 7201690 ~ 7201927 (+) True G54946
TU62520 lncRNA downstream 90623 7211402 ~ 7211650 (+) True G54952
TU62528 lncRNA downstream 104362 7225141 ~ 7227087 (+) True G54958
TU62525 lncRNA downstream 106672 7227451 ~ 7228376 (+) False G54957
CI01000009_07111833_07115320.mRNA mRNA upstream 5073 7111722 ~ 7115422 (+) False CI01000009_07111833_07115320
CI01000009_07101768_07105835.mRNA mRNA upstream 14486 7101269 ~ 7106009 (+) True CI01000009_07101768_07105835
CI01000009_07091022_07092696.mRNA mRNA upstream 27694 7090918 ~ 7092801 (+) True CI01000009_07091022_07092696
CI01000009_07051811_07054331.mRNA mRNA upstream 65870 7050718 ~ 7054625 (+) True CI01000009_07051811_07054331
CI01000009_06975071_07009147.mRNA mRNA upstream 111078 6975071 ~ 7009417 (+) True CI01000009_06975071_07009147
CI01000009_07316335_07346664.mRNA mRNA downstream 195556 7316335 ~ 7346664 (+) True CI01000009_07316335_07346664
CI01000009_07361747_07377615.mRNA mRNA downstream 240968 7361747 ~ 7378451 (+) True CI01000009_07361747_07377615
CI01000009_07392574_07395739.mRNA mRNA downstream 271702 7392481 ~ 7395770 (+) True CI01000009_07392574_07395739
CI01000009_07440170_07459782.mRNA mRNA downstream 319260 7440039 ~ 7460409 (+) True CI01000009_07440170_07459782
CI01000009_07490344_07493862.mRNA mRNA downstream 369469 7490248 ~ 7493862 (+) True CI01000009_07490344_07493862
TU61103 other upstream 872103 6245564 ~ 6248392 (+) True G53651
TU61110 other upstream 1187694 5860302 ~ 5860756 (+) True G53655
TU60796 other upstream 1581441 5522242 ~ 5522356 (+) False G53388
TU60791 other upstream 1581441 5535245 ~ 5538095 (+) False G53388
TU58748 other upstream 3912571 3202905 ~ 3207924 (+) True CI01000009_03202999_03207060
TU63847 other downstream 2008521 9129300 ~ 9130286 (+) True G56100
TU64139 other downstream 2732580 9853359 ~ 9853515 (+) True G56323
TU65813 other downstream 4640007 11760786 ~ 11760858 (+) True G57782
TU65844 other downstream 4813163 11933942 ~ 11935251 (+) False G57811
TU65845 other downstream 4813163 11933942 ~ 11935251 (+) False G57811

Expression Profile