RNA id: TU62727


Basic Information

Item Value
RNA id TU62727
length 216
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G55151
representative True

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 7222308 ~ 7222523 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TATGAATTGAGCGGTTTTGTCCAAATTTTCTTAAGAGACATGATTGCTTTATTATATGATGAACAGATTGAATTTAGGCTTATATTCACATGTAAACATTCATCAACTCACACATCAGTTGTGGTAAACAGAAGCTCAAGCATGTTTGCTGGACGCGTGTGAGAACCAATGAGGTTCATTCTCGTGTTACGCAGCACGTTTGAGCTTCCACAAGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU62719 lncRNA downstream 10013 7211932 ~ 7212295 (-) True G55143
TU62697 lncRNA downstream 39069 7182882 ~ 7183239 (-) True G55121
TU62686 lncRNA downstream 50790 7171097 ~ 7171518 (-) True G55110
TU62484 lncRNA downstream 65133 7156771 ~ 7157175 (-) True G54917
TU62467 lncRNA downstream 80344 7141729 ~ 7141964 (-) True G54900
TU62731 lncRNA upstream 7292 7229815 ~ 7230028 (-) True CI01000009_07224625_07229839
TU62732 lncRNA upstream 8586 7231109 ~ 7231362 (-) True G55156
TU62747 lncRNA upstream 36963 7259486 ~ 7259714 (-) True G55171
TU62754 lncRNA upstream 47255 7269778 ~ 7270718 (-) True G55178
TU62791 lncRNA upstream 174404 7396927 ~ 7397126 (-) True G55214
CI01000009_07064060_07084764.mRNA mRNA downstream 137090 7063797 ~ 7085218 (-) True CI01000009_07064060_07084764
CI01000009_07020336_07047155.mRNA mRNA downstream 174131 7020315 ~ 7048177 (-) True CI01000009_07020336_07047155
CI01000009_06913437_06917631.mRNA mRNA downstream 304677 6912470 ~ 6917631 (-) True CI01000009_06913437_06917631
CI01000009_06891877_06908223.mRNA mRNA downstream 314085 6891241 ~ 6908223 (-) True CI01000009_06891877_06908223
CI01000009_06253421_06255264.mRNA mRNA downstream 966362 6253421 ~ 6255946 (-) True CI01000009_06253421_06255264
CI01000009_07224625_07229839.mRNA mRNA upstream 1793 7224316 ~ 7230651 (-) False CI01000009_07224625_07229839
CI01000009_07383927_07391805.mRNA mRNA upstream 161131 7383654 ~ 7391994 (-) True CI01000009_07383927_07391805
CI01000009_07500752_07541007.mRNA mRNA upstream 278079 7500602 ~ 7541007 (-) True CI01000009_07500752_07541007
CI01000009_07625693_07637462.mRNA mRNA upstream 403031 7625554 ~ 7637462 (-) True CI01000009_07625693_07637462
CI01000009_07953250_07953748.mRNA mRNA upstream 730195 7952718 ~ 7954139 (-) True CI01000009_07953250_07953748
TU60944 other downstream 1717060 5502395 ~ 5505248 (-) False G53515
TU60172 other downstream 2990839 4217420 ~ 4231469 (-) True G52828
TU59814 other downstream 3960351 3261203 ~ 3261957 (-) True CI01000009_03261739_03262843
TU59711 other downstream 4322901 2899254 ~ 2899407 (-) True G52415
TU59706 other downstream 4659775 2551724 ~ 2562533 (-) True G52410
TU63500 other upstream 1203298 8425821 ~ 8428012 (-) True G55814
TU64878 other upstream 1635629 8858152 ~ 8860563 (-) True CI01000009_08858198_08860555
TU67286 other upstream 5065694 12288217 ~ 12289518 (-) False G59097
TU67287 other upstream 5065694 12288217 ~ 12288977 (-) True G59097
TU67750 other upstream 6752865 13975388 ~ 13978614 (-) True CI01000009_13975122_13976026

Expression Profile