RNA id: TU62754


Basic Information

Item Value
RNA id TU62754
length 941
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G55178
representative True

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 7269778 ~ 7270718 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTTTCAGTGTGGGCCCTTTAAATGCAAATGAGCTGCTGCACTCGGCCTAAGAGGGCGGAGCTTCACGAGCTGATTCTCCAGTGACAGGATTCAGTCAGGACGCACTATAATGTCAGGAACTGTGAATATATGCTGCATGGAGATAGAACAGGTATAGTTTAGTTCAATTACGGTTATAACTTATATTGTCTTCTTGTTTTTATCCACTATATTAGTACAAGCCAGTTTACCGATGAGTTTTATAACGTTTATTGTACTTCACGCAAAATATGAAGCGTCCGTTTTCACTCTAGAAAATCACTGTAAGAGCTTAATAAAACACAGTGTAAGTGTGCATTAAAATATTATCCATAAACTCTCTCTCTCCCTTGCATTATCATCAACATACATAGCAAAGTACACAGAAACACTCGTTACAACTAACAGTAAACAAATATATAAAGATCTTATGCCTTTTCAGGTGTTGCTTAATAAACTGGTAAACTTTATATCCGTAAATCAACTCCAATGAACTGTAATAAAGTGCTCTCACCTTCATTACTGCCATTTCCAGTATCACTCTGGAGACTGTAAGCTGGATCACGAACAGTTTGTAGTTATATATCCTTGAGTAGCACATTTTTAGCACAGTCTTTGTTTTGTATTGTCCCTTTGTATTGATATTCGTTCACAAAGCAGACCGGTGTGAAATGATTTGCGCAGACATAAACGAATTAGGTAGAGTTGAGGGAGCATTTTCTTCAAAAACAAAATGAATCCACCTCGTCTTCAGCGGCTCAGATTCAGGGAGTAAATGGAGAGAGCTATGTGGATTAATCCATCCAGCTACAGAACACCTAAAAAGCTTGGTCAGTGCAGCAATGGCGGACTGTGTACAACTGGCTGTGAACTCGCTCAGGGCGGTTCTATGTTAAAATGGCAGTGTCTGTCAACATTCGTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU62747 lncRNA downstream 10064 7259486 ~ 7259714 (-) True G55171
TU62732 lncRNA downstream 38416 7231109 ~ 7231362 (-) True G55156
TU62731 lncRNA downstream 39750 7229815 ~ 7230028 (-) True CI01000009_07224625_07229839
TU62727 lncRNA downstream 47255 7222308 ~ 7222523 (-) True G55151
TU62719 lncRNA downstream 57483 7211932 ~ 7212295 (-) True G55143
TU62791 lncRNA upstream 126209 7396927 ~ 7397126 (-) True G55214
TU62792 lncRNA upstream 126492 7397210 ~ 7397409 (-) True G55215
TU62795 lncRNA upstream 152649 7423367 ~ 7423595 (-) True G55218
TU62796 lncRNA upstream 166937 7437655 ~ 7437983 (-) True G55219
TU62831 lncRNA upstream 216350 7487068 ~ 7487290 (-) True G55238
CI01000009_07224625_07229839.mRNA mRNA downstream 39127 7224316 ~ 7230651 (-) False CI01000009_07224625_07229839
CI01000009_07064060_07084764.mRNA mRNA downstream 184560 7063797 ~ 7085218 (-) True CI01000009_07064060_07084764
CI01000009_07020336_07047155.mRNA mRNA downstream 221601 7020315 ~ 7048177 (-) True CI01000009_07020336_07047155
CI01000009_06913437_06917631.mRNA mRNA downstream 352147 6912470 ~ 6917631 (-) True CI01000009_06913437_06917631
CI01000009_06891877_06908223.mRNA mRNA downstream 361555 6891241 ~ 6908223 (-) True CI01000009_06891877_06908223
CI01000009_07383927_07391805.mRNA mRNA upstream 112936 7383654 ~ 7391994 (-) True CI01000009_07383927_07391805
CI01000009_07500752_07541007.mRNA mRNA upstream 229884 7500602 ~ 7541007 (-) True CI01000009_07500752_07541007
CI01000009_07625693_07637462.mRNA mRNA upstream 354836 7625554 ~ 7637462 (-) True CI01000009_07625693_07637462
CI01000009_07953250_07953748.mRNA mRNA upstream 682000 7952718 ~ 7954139 (-) True CI01000009_07953250_07953748
CI01000009_08050911_08053397.mRNA mRNA upstream 779703 8050421 ~ 8053500 (-) True CI01000009_08050911_08053397
TU60944 other downstream 1764530 5502395 ~ 5505248 (-) False G53515
TU60172 other downstream 3038309 4217420 ~ 4231469 (-) True G52828
TU59814 other downstream 4007821 3261203 ~ 3261957 (-) True CI01000009_03261739_03262843
TU59711 other downstream 4370371 2899254 ~ 2899407 (-) True G52415
TU59706 other downstream 4707245 2551724 ~ 2562533 (-) True G52410
TU63500 other upstream 1155103 8425821 ~ 8428012 (-) True G55814
TU64878 other upstream 1587434 8858152 ~ 8860563 (-) True CI01000009_08858198_08860555
TU67286 other upstream 5017499 12288217 ~ 12289518 (-) False G59097
TU67287 other upstream 5017499 12288217 ~ 12288977 (-) True G59097
TU67750 other upstream 6704670 13975388 ~ 13978614 (-) True CI01000009_13975122_13976026

Expression Profile