RNA id: TU62791


Basic Information

Item Value
RNA id TU62791
length 200
lncRNA type inter_gene
GC content 0.31
exon number 1
gene id G55214
representative True

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 7396927 ~ 7397126 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATTTAAACAACTTAATAGTGTTATTAGGAACACTTACTGGGATGTATGAGCTATGTGCTTATTCAAGCAATTTATGTAGCTTGTCTAGATTGTGTTTCTATTGTGAACCTCTATAAATCAATGTCCAAACTATCATTTCTGAAGGAAATACTGCAAAGTAACAAAAGAAAAGTTAGATGAGAAACATAGATAAAGGAGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU62754 lncRNA downstream 126209 7269778 ~ 7270718 (-) True G55178
TU62747 lncRNA downstream 137213 7259486 ~ 7259714 (-) True G55171
TU62732 lncRNA downstream 165565 7231109 ~ 7231362 (-) True G55156
TU62731 lncRNA downstream 166899 7229815 ~ 7230028 (-) True CI01000009_07224625_07229839
TU62727 lncRNA downstream 174404 7222308 ~ 7222523 (-) True G55151
TU62792 lncRNA upstream 84 7397210 ~ 7397409 (-) True G55215
TU62795 lncRNA upstream 26241 7423367 ~ 7423595 (-) True G55218
TU62796 lncRNA upstream 40529 7437655 ~ 7437983 (-) True G55219
TU62831 lncRNA upstream 89942 7487068 ~ 7487290 (-) True G55238
TU62843 lncRNA upstream 144719 7541845 ~ 7542076 (-) True G55249
CI01000009_07383927_07391805.mRNA mRNA downstream 4933 7383654 ~ 7391994 (-) True CI01000009_07383927_07391805
CI01000009_07224625_07229839.mRNA mRNA downstream 166276 7224316 ~ 7230651 (-) False CI01000009_07224625_07229839
CI01000009_07064060_07084764.mRNA mRNA downstream 311709 7063797 ~ 7085218 (-) True CI01000009_07064060_07084764
CI01000009_07020336_07047155.mRNA mRNA downstream 348750 7020315 ~ 7048177 (-) True CI01000009_07020336_07047155
CI01000009_06913437_06917631.mRNA mRNA downstream 479296 6912470 ~ 6917631 (-) True CI01000009_06913437_06917631
CI01000009_07500752_07541007.mRNA mRNA upstream 103476 7500602 ~ 7541007 (-) True CI01000009_07500752_07541007
CI01000009_07625693_07637462.mRNA mRNA upstream 228428 7625554 ~ 7637462 (-) True CI01000009_07625693_07637462
CI01000009_07953250_07953748.mRNA mRNA upstream 555592 7952718 ~ 7954139 (-) True CI01000009_07953250_07953748
CI01000009_08050911_08053397.mRNA mRNA upstream 653295 8050421 ~ 8053500 (-) True CI01000009_08050911_08053397
CI01000009_08058976_08066474.mRNA mRNA upstream 661498 8058624 ~ 8066778 (-) True CI01000009_08058976_08066474
TU60944 other downstream 1891679 5502395 ~ 5505248 (-) False G53515
TU60172 other downstream 3165458 4217420 ~ 4231469 (-) True G52828
TU59814 other downstream 4134970 3261203 ~ 3261957 (-) True CI01000009_03261739_03262843
TU59711 other downstream 4497520 2899254 ~ 2899407 (-) True G52415
TU59706 other downstream 4834394 2551724 ~ 2562533 (-) True G52410
TU63500 other upstream 1028695 8425821 ~ 8428012 (-) True G55814
TU64878 other upstream 1461026 8858152 ~ 8860563 (-) True CI01000009_08858198_08860555
TU67286 other upstream 4891091 12288217 ~ 12289518 (-) False G59097
TU67287 other upstream 4891091 12288217 ~ 12288977 (-) True G59097
TU67750 other upstream 6578262 13975388 ~ 13978614 (-) True CI01000009_13975122_13976026

Expression Profile