RNA id: TU64880


Basic Information

Item Value
RNA id TU64880
length 605
lncRNA type read_through
GC content 0.29
exon number 2
gene id G56977
representative True

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 8823621 ~ 8861192 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ACGATTCGATACATATCACGATACTGAACTCACGATACGATATTATTGCGATACTTCAAGACATATAGTAAAAGGATAGCAAAAAATGTACTGATGATAAAAATGCTAAATTTGGTATTACATTGGGGGTGGAAATGAATAGGCTTGGACTTGGTGCTGGTAACCCAATGCACAGGACAATGGTGACACCAGAATAAAAATATTCATGATTCTAACGCTAAAACACAGATTTATTTTAGATGAATATGTTTGCATTCTGTCACTGACTAGATATATTTCAATTAATGTAAGCCACTTTTTACTGGTAACAAGACTTTTGGCATTAGCAGGACCCACAAATATTCCCCCATTGCGTTATTACACATTATATTCAACATTATATATATTAGTTTAATGTAGTACTGACAATAAATCTCTGTAAAGTTGAATTTTTTTTTTCTCACAGTAATTTTTTTTTTTTGGTGAACACACTGTCACTATCCACAAAGCAATATTGTATTTTTGTATTGCGATATATTGTGACACTATATATTGTTGCCCCCCTAACATATATATATATATATATATATATATATATATATATATATATATATATATATAAAAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU64832 lncRNA downstream 49219 8769318 ~ 8774402 (-) True G56943
TU64830 lncRNA downstream 54696 8767411 ~ 8768925 (-) True G56942
TU64823 lncRNA downstream 57344 8764579 ~ 8766277 (-) True G56940
TU64825 lncRNA downstream 57507 8759641 ~ 8766114 (-) False G56940
TU64814 lncRNA downstream 103067 8720348 ~ 8720554 (-) True CI01000009_08718943_08719773
TU64839 lncRNA upstream 1874 8863066 ~ 8869151 (-) False G56946
TU64840 lncRNA upstream 4281 8865473 ~ 8869192 (-) False G56946
TU64838 lncRNA upstream 5435 8866627 ~ 8869151 (-) True G56946
TU64889 lncRNA upstream 24232 8885424 ~ 8885706 (-) True G56986
TU64893 lncRNA upstream 34960 8896152 ~ 8896374 (-) True G56988
CI01000009_08739549_08745500.mRNA mRNA downstream 78121 8739549 ~ 8745500 (-) True CI01000009_08739549_08745500
CI01000009_08737485_08739374.mRNA mRNA downstream 84247 8737253 ~ 8739374 (-) True CI01000009_08737485_08739374
CI01000009_08718943_08719773.mRNA mRNA downstream 101527 8718807 ~ 8722094 (-) False CI01000009_08718943_08719773
CI01000009_08700152_08716708.mRNA mRNA downstream 106547 8700120 ~ 8717074 (-) True CI01000009_08700152_08716708
CI01000009_08683782_08694491.mRNA mRNA downstream 128200 8683680 ~ 8695421 (-) True CI01000009_08683782_08694491
CI01000009_08870258_08879256.mRNA mRNA upstream 9007 8870199 ~ 8879256 (-) True CI01000009_08870258_08879256
CI01000009_08882412_08884827.mRNA mRNA upstream 20324 8881516 ~ 8885373 (-) True CI01000009_08882412_08884827
CI01000009_08930289_08935481.mRNA mRNA upstream 68728 8929920 ~ 8935790 (-) True CI01000009_08930289_08935481
CI01000009_08950933_08951298.mRNA mRNA upstream 89543 8950735 ~ 8952869 (-) True CI01000009_08950933_08951298
CI01000009_09014504_09031053.mRNA mRNA upstream 153035 9014227 ~ 9031053 (-) True CI01000009_09014504_09031053
TU63500 other downstream 395609 8425821 ~ 8428012 (-) True G55814
TU60944 other downstream 3318373 5502395 ~ 5505248 (-) False G53515
TU60172 other downstream 4592152 4217420 ~ 4231469 (-) True G52828
TU59814 other downstream 5561664 3261203 ~ 3261957 (-) True CI01000009_03261739_03262843
TU59711 other downstream 5924214 2899254 ~ 2899407 (-) True G52415
TU67286 other upstream 3427025 12288217 ~ 12289518 (-) False G59097
TU67287 other upstream 3427025 12288217 ~ 12288977 (-) True G59097
TU67750 other upstream 5114196 13975388 ~ 13978614 (-) True CI01000009_13975122_13976026
TU67748 other upstream 5172372 14033564 ~ 14037873 (-) True G59490
TU68092 other upstream 6001205 14862397 ~ 14887464 (-) True G59811

Expression Profile