RNA id: TU65002


Basic Information

Item Value
RNA id TU65002
length 219
lncRNA type inter_gene
GC content 0.51
exon number 1
gene id G57068
representative True

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 9260261 ~ 9260479 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AAAATACTATACATACATTTATAGGTAAAATCGAACTCCGAGCCTCCTGTATGCATTCTGTGGCCCTGTCCCAAATGGCACCCTAAACCCTCACGGTCTTCCTCTGAGTCCTCACTTTCACGACGTAATGCCGCTTTGACTGCCAGGTAAAGTCCTCTGCATAGCTCACAGTCTTGCGGGCTCAGCAGAAGTGCGCATCGAGGGCGCATAGCAGCCGCA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU64978 lncRNA downstream 91531 9118415 ~ 9168730 (-) True G57044
TU64971 lncRNA downstream 227511 9032227 ~ 9032750 (-) True G57037
TU64987 lncRNA downstream 311080 8948856 ~ 8949181 (-) True G57053
TU64904 lncRNA downstream 335433 8924587 ~ 8924828 (-) True G56999
TU64902 lncRNA downstream 337295 8922694 ~ 8922966 (-) True G56997
TU65011 lncRNA upstream 135816 9396295 ~ 9396901 (-) True G57077
TU64951 lncRNA upstream 179766 9440245 ~ 9447216 (-) True G57020
TU65032 lncRNA upstream 199378 9459857 ~ 9460086 (-) True G57097
TU65043 lncRNA upstream 214971 9475450 ~ 9475671 (-) True G57106
TU65048 lncRNA upstream 227839 9488318 ~ 9488539 (-) True G57111
CI01000009_09125671_09199937.mRNA mRNA downstream 60324 9125671 ~ 9199937 (-) True CI01000009_09125671_09199937
CI01000009_09103888_09112675.mRNA mRNA downstream 147586 9103790 ~ 9112675 (-) True CI01000009_09103888_09112675
CI01000009_09089882_09100384.mRNA mRNA downstream 159375 9089571 ~ 9100886 (-) True CI01000009_09089882_09100384
CI01000009_09049178_09088498.mRNA mRNA downstream 171763 9048682 ~ 9088498 (-) True CI01000009_09049178_09088498
CI01000009_09031859_09038439.mRNA mRNA downstream 221517 9031725 ~ 9038744 (-) True CI01000009_09031859_09038439
CI01000009_09263668_09270542.mRNA mRNA upstream 3146 9263625 ~ 9272243 (-) True CI01000009_09263668_09270542
CI01000009_09368857_09369508.mRNA mRNA upstream 108352 9368831 ~ 9369508 (-) True CI01000009_09368857_09369508
CI01000009_09373830_09374425.mRNA mRNA upstream 113351 9373830 ~ 9374425 (-) True CI01000009_09373830_09374425
CI01000009_09375453_09376121.mRNA mRNA upstream 114702 9375181 ~ 9376121 (-) True CI01000009_09375453_09376121
CI01000009_09378166_09378781.mRNA mRNA upstream 117631 9378110 ~ 9378781 (-) True CI01000009_09378166_09378781
TU64878 other downstream 399698 8858152 ~ 8860563 (-) True CI01000009_08858198_08860555
TU63500 other downstream 832249 8425821 ~ 8428012 (-) True G55814
TU60944 other downstream 3755013 5502395 ~ 5505248 (-) False G53515
TU60172 other downstream 5028792 4217420 ~ 4231469 (-) True G52828
TU59814 other downstream 5998304 3261203 ~ 3261957 (-) True CI01000009_03261739_03262843
TU67286 other upstream 3027738 12288217 ~ 12289518 (-) False G59097
TU67287 other upstream 3027738 12288217 ~ 12288977 (-) True G59097
TU67750 other upstream 4714909 13975388 ~ 13978614 (-) True CI01000009_13975122_13976026
TU67748 other upstream 4773085 14033564 ~ 14037873 (-) True G59490
TU68092 other upstream 5601918 14862397 ~ 14887464 (-) True G59811

Expression Profile