RNA id: TU65011


Basic Information

Item Value
RNA id TU65011
length 411
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G57077
representative True

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 9396295 ~ 9396901 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CCTCAATCCATCTCTGTGCTTCTGANNNNNNNNNNTCATAACCCACTGCACTCTGCGGTCGCCACTCCATCACCGGTCTTAAGTGGTGAAGCTGTAATGAAACAGGCGTCTACACTCCAAGAGCGCGCGCAACACGCGCGTAGTCAAGACGCAATCGTTGTTTCACCGCGTCGCGTGAATATGTTTAAGACTACCAGGTTTCTTTAAAAAACAAAAAAACAAAAAAAAACAAAAAAACAAAAGAAGTCAGCCGGTAAAACGCTTTTCTTATTCGACTACCAGTATCAAAACTATCACTCTGTCGAACGTCAAAGACCAACCCTGCTATAACAACCGTAAAGGACTCAGTGTAAACTCTTAAATCTCTTGTTCTTTTACCTACTCCAGAGAAACTTTAGAGTTGCGTTGTGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65002 lncRNA downstream 135816 9260261 ~ 9260479 (-) True G57068
TU64978 lncRNA downstream 227565 9118415 ~ 9168730 (-) True G57044
TU64971 lncRNA downstream 363545 9032227 ~ 9032750 (-) True G57037
TU64987 lncRNA downstream 447114 8948856 ~ 8949181 (-) True G57053
TU64904 lncRNA downstream 471467 8924587 ~ 8924828 (-) True G56999
TU64951 lncRNA upstream 43344 9440245 ~ 9447216 (-) True G57020
TU65032 lncRNA upstream 62956 9459857 ~ 9460086 (-) True G57097
TU65043 lncRNA upstream 78549 9475450 ~ 9475671 (-) True G57106
TU65048 lncRNA upstream 91417 9488318 ~ 9488539 (-) True G57111
TU65052 lncRNA upstream 160738 9557639 ~ 9569659 (-) True G57114
CI01000009_09383289_09389713.mRNA mRNA downstream 6582 9383289 ~ 9389713 (-) True CI01000009_09383289_09389713
CI01000009_09380339_09381069.mRNA mRNA downstream 15226 9380286 ~ 9381069 (-) True CI01000009_09380339_09381069
CI01000009_09378166_09378781.mRNA mRNA downstream 17514 9378110 ~ 9378781 (-) True CI01000009_09378166_09378781
CI01000009_09375453_09376121.mRNA mRNA downstream 20174 9375181 ~ 9376121 (-) True CI01000009_09375453_09376121
CI01000009_09373830_09374425.mRNA mRNA downstream 21870 9373830 ~ 9374425 (-) True CI01000009_09373830_09374425
CI01000009_09483061_09483927.mRNA mRNA upstream 84787 9481688 ~ 9484474 (-) True CI01000009_09483061_09483927
CI01000009_09494831_09498396.mRNA mRNA upstream 97851 9494752 ~ 9498396 (-) True CI01000009_09494831_09498396
CI01000009_09502714_09505047.mRNA mRNA upstream 105772 9502673 ~ 9505047 (-) True CI01000009_09502714_09505047
CI01000009_09507352_09522340.mRNA mRNA upstream 110227 9507128 ~ 9522340 (-) True CI01000009_09507352_09522340
CI01000009_09565012_09566010.mRNA mRNA upstream 167545 9564446 ~ 9568007 (-) True CI01000009_09565012_09566010
TU64878 other downstream 535732 8858152 ~ 8860563 (-) True CI01000009_08858198_08860555
TU63500 other downstream 968283 8425821 ~ 8428012 (-) True G55814
TU60944 other downstream 3891047 5502395 ~ 5505248 (-) False G53515
TU60172 other downstream 5164826 4217420 ~ 4231469 (-) True G52828
TU59814 other downstream 6134338 3261203 ~ 3261957 (-) True CI01000009_03261739_03262843
TU67286 other upstream 2891316 12288217 ~ 12289518 (-) False G59097
TU67287 other upstream 2891316 12288217 ~ 12288977 (-) True G59097
TU67750 other upstream 4578487 13975388 ~ 13978614 (-) True CI01000009_13975122_13976026
TU67748 other upstream 4636663 14033564 ~ 14037873 (-) True G59490
TU68092 other upstream 5465496 14862397 ~ 14887464 (-) True G59811

Expression Profile