RNA id: TU65048


Basic Information

Item Value
RNA id TU65048
length 222
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G57111
representative True

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 9488318 ~ 9488539 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AAAATGTCCAAACTGGGCCCAATTAGCCATTTTCTCTCCCCGGTGTCATGTGACTCGTTAGTGTTACAAGGTCTCAGGTGTGAATGGGGAGCAGGTTTGTTAAATTTGGTGTTATCGCTCTCACTCTCTCATACTGGTCACTGGAAGTTCAACATGGCACTTCATGACAAAGAACTCTCTGAGGATCTGAAAAAAAGAATTGTTGCTCTACATAAAGATGGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65043 lncRNA downstream 12647 9475450 ~ 9475671 (-) True G57106
TU65032 lncRNA downstream 28232 9459857 ~ 9460086 (-) True G57097
TU64951 lncRNA downstream 41102 9440245 ~ 9447216 (-) True G57020
TU65011 lncRNA downstream 91417 9396295 ~ 9396901 (-) True G57077
TU65002 lncRNA downstream 227839 9260261 ~ 9260479 (-) True G57068
TU65052 lncRNA upstream 69100 9557639 ~ 9569659 (-) True G57114
TU65143 lncRNA upstream 265209 9753748 ~ 9754109 (-) True G57176
TU65146 lncRNA upstream 278235 9766774 ~ 9769132 (-) True G57179
TU65147 lncRNA upstream 283180 9771719 ~ 9772508 (-) True G57180
TU64976 lncRNA upstream 384799 9873338 ~ 9875717 (-) True G57042
CI01000009_09483061_09483927.mRNA mRNA downstream 3844 9481688 ~ 9484474 (-) True CI01000009_09483061_09483927
CI01000009_09383289_09389713.mRNA mRNA downstream 98605 9383289 ~ 9389713 (-) True CI01000009_09383289_09389713
CI01000009_09380339_09381069.mRNA mRNA downstream 107249 9380286 ~ 9381069 (-) True CI01000009_09380339_09381069
CI01000009_09378166_09378781.mRNA mRNA downstream 109537 9378110 ~ 9378781 (-) True CI01000009_09378166_09378781
CI01000009_09375453_09376121.mRNA mRNA downstream 112197 9375181 ~ 9376121 (-) True CI01000009_09375453_09376121
CI01000009_09494831_09498396.mRNA mRNA upstream 6213 9494752 ~ 9498396 (-) True CI01000009_09494831_09498396
CI01000009_09502714_09505047.mRNA mRNA upstream 14134 9502673 ~ 9505047 (-) True CI01000009_09502714_09505047
CI01000009_09507352_09522340.mRNA mRNA upstream 18589 9507128 ~ 9522340 (-) True CI01000009_09507352_09522340
CI01000009_09565012_09566010.mRNA mRNA upstream 75907 9564446 ~ 9568007 (-) True CI01000009_09565012_09566010
CI01000009_09644689_09665350.mRNA mRNA upstream 154777 9643316 ~ 9665830 (-) True CI01000009_09644689_09665350
TU64878 other downstream 627755 8858152 ~ 8860563 (-) True CI01000009_08858198_08860555
TU63500 other downstream 1060306 8425821 ~ 8428012 (-) True G55814
TU60944 other downstream 3983070 5502395 ~ 5505248 (-) False G53515
TU60172 other downstream 5256849 4217420 ~ 4231469 (-) True G52828
TU59814 other downstream 6226361 3261203 ~ 3261957 (-) True CI01000009_03261739_03262843
TU67286 other upstream 2799678 12288217 ~ 12289518 (-) False G59097
TU67287 other upstream 2799678 12288217 ~ 12288977 (-) True G59097
TU67750 other upstream 4486849 13975388 ~ 13978614 (-) True CI01000009_13975122_13976026
TU67748 other upstream 4545025 14033564 ~ 14037873 (-) True G59490
TU68092 other upstream 5373858 14862397 ~ 14887464 (-) True G59811

Expression Profile