RNA id: TU65146


Basic Information

Item Value
RNA id TU65146
length 246
lncRNA type sense_over
GC content 0.32
exon number 2
gene id G57179
representative True

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 9766774 ~ 9769132 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GCCAATCACATGCCTTGCAACAGAAAGAAACTGTGATTTACTTCTCGCGATAGAGTCAACGTGATTCAAAACTCTTTTGCTGAAGAAAATGAAGAATTTAAACGCATTTACACTAAAGAAGAAACTTGTCCATGAAAAAGGACAAATAAAAGAAATTATCTTGCTCTATCAGAGCAAGTGAAAATTAAGTGTTTATATAGTTGATTATATATAGCAATAGAGACTCAAACATGTAAGGTTATGTAG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65143 lncRNA downstream 12665 9753748 ~ 9754109 (-) True G57176
TU65052 lncRNA downstream 197115 9557639 ~ 9569659 (-) True G57114
TU65048 lncRNA downstream 278235 9488318 ~ 9488539 (-) True G57111
TU65043 lncRNA downstream 291103 9475450 ~ 9475671 (-) True G57106
TU65032 lncRNA downstream 306688 9459857 ~ 9460086 (-) True G57097
TU65147 lncRNA upstream 2587 9771719 ~ 9772508 (-) True G57180
TU64976 lncRNA upstream 104206 9873338 ~ 9875717 (-) True G57042
TU64909 lncRNA upstream 139668 9908800 ~ 9910481 (-) True CI01000009_09908895_09911939
TU65158 lncRNA upstream 146056 9915188 ~ 9915459 (-) True G57189
TU65187 lncRNA upstream 195198 9964330 ~ 9964556 (-) True G57210
CI01000009_09756032_09759196.mRNA mRNA downstream 7578 9754836 ~ 9759196 (-) True CI01000009_09756032_09759196
CI01000009_09747388_09751284.mRNA mRNA downstream 14718 9746969 ~ 9752056 (-) True CI01000009_09747388_09751284
CI01000009_09644689_09665350.mRNA mRNA downstream 100944 9643316 ~ 9665830 (-) True CI01000009_09644689_09665350
CI01000009_09565012_09566010.mRNA mRNA downstream 198767 9564446 ~ 9568007 (-) True CI01000009_09565012_09566010
CI01000009_09507352_09522340.mRNA mRNA downstream 244434 9507128 ~ 9522340 (-) True CI01000009_09507352_09522340
CI01000009_09787635_09787950.mRNA mRNA upstream 16990 9786122 ~ 9787950 (-) True CI01000009_09787635_09787950
CI01000009_09791141_09791496.mRNA mRNA upstream 22009 9791141 ~ 9791878 (-) True CI01000009_09791141_09791496
CI01000009_09792753_09812884.mRNA mRNA upstream 22917 9792049 ~ 9813334 (-) True CI01000009_09792753_09812884
CI01000009_09817498_09826525.mRNA mRNA upstream 48115 9817247 ~ 9826525 (-) True CI01000009_09817498_09826525
CI01000009_09836011_09846297.mRNA mRNA upstream 65619 9834751 ~ 9848630 (-) True CI01000009_09836011_09846297
TU64878 other downstream 906211 8858152 ~ 8860563 (-) True CI01000009_08858198_08860555
TU63500 other downstream 1338762 8425821 ~ 8428012 (-) True G55814
TU60944 other downstream 4261526 5502395 ~ 5505248 (-) False G53515
TU60172 other downstream 5535305 4217420 ~ 4231469 (-) True G52828
TU59814 other downstream 6504817 3261203 ~ 3261957 (-) True CI01000009_03261739_03262843
TU67286 other upstream 2519085 12288217 ~ 12289518 (-) False G59097
TU67287 other upstream 2519085 12288217 ~ 12288977 (-) True G59097
TU67750 other upstream 4206256 13975388 ~ 13978614 (-) True CI01000009_13975122_13976026
TU67748 other upstream 4264432 14033564 ~ 14037873 (-) True G59490
TU68092 other upstream 5093265 14862397 ~ 14887464 (-) True G59811

Expression Profile