RNA id: TU65147


Basic Information

Item Value
RNA id TU65147
length 382
lncRNA type antisense_over
GC content 0.45
exon number 5
gene id G57180
representative True

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 9771719 ~ 9772508 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CATGTTAACTTTCAATCGTCCAGCATTATTGAACATTTTGTTCTTCACAATGACTTGGTATGTGTTCAAGGCCTCAGTGTACATGTCATTATTGGCATATTGGTTTGCTAAATTAAACAACACAGAGTAGGTCAGATCCAGATTGATGTGGTCTGCAGTGCCTGTTTGTTCTCTCTGTCTCACCAGAGCCCTTTCCTTCCTGCCCGCCTCTTTGGCTTTCTCTAGAGACAGCTGAAGATCCCCACGAGCATGAGCGAGACAGCTCTCCTCTATCAAATCATTCACCTTCTTTTCCAGGATCTTTATCTTTTCCTCTGGCGTGTCTTCGTTCTGTCTCTCTAATGGAGGGGCTGGTCCTTTTGCTTGTCCCAGTGGATCAAAC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65146 lncRNA downstream 2587 9766774 ~ 9769132 (-) True G57179
TU65143 lncRNA downstream 17610 9753748 ~ 9754109 (-) True G57176
TU65052 lncRNA downstream 202060 9557639 ~ 9569659 (-) True G57114
TU65048 lncRNA downstream 283180 9488318 ~ 9488539 (-) True G57111
TU65043 lncRNA downstream 296048 9475450 ~ 9475671 (-) True G57106
TU64976 lncRNA upstream 100830 9873338 ~ 9875717 (-) True G57042
TU64909 lncRNA upstream 136292 9908800 ~ 9910481 (-) True CI01000009_09908895_09911939
TU65158 lncRNA upstream 142680 9915188 ~ 9915459 (-) True G57189
TU65187 lncRNA upstream 191822 9964330 ~ 9964556 (-) True G57210
TU65196 lncRNA upstream 213565 9986073 ~ 9986491 (-) True G57219
CI01000009_09764731_09769444.mRNA mRNA downstream 2275 9764592 ~ 9769444 (-) True CI01000009_09764731_09769444
CI01000009_09756032_09759196.mRNA mRNA downstream 12523 9754836 ~ 9759196 (-) True CI01000009_09756032_09759196
CI01000009_09747388_09751284.mRNA mRNA downstream 19663 9746969 ~ 9752056 (-) True CI01000009_09747388_09751284
CI01000009_09644689_09665350.mRNA mRNA downstream 105889 9643316 ~ 9665830 (-) True CI01000009_09644689_09665350
CI01000009_09565012_09566010.mRNA mRNA downstream 203712 9564446 ~ 9568007 (-) True CI01000009_09565012_09566010
CI01000009_09787635_09787950.mRNA mRNA upstream 13614 9786122 ~ 9787950 (-) True CI01000009_09787635_09787950
CI01000009_09791141_09791496.mRNA mRNA upstream 18633 9791141 ~ 9791878 (-) True CI01000009_09791141_09791496
CI01000009_09792753_09812884.mRNA mRNA upstream 19541 9792049 ~ 9813334 (-) True CI01000009_09792753_09812884
CI01000009_09817498_09826525.mRNA mRNA upstream 44739 9817247 ~ 9826525 (-) True CI01000009_09817498_09826525
CI01000009_09836011_09846297.mRNA mRNA upstream 62243 9834751 ~ 9848630 (-) True CI01000009_09836011_09846297
TU64878 other downstream 911156 8858152 ~ 8860563 (-) True CI01000009_08858198_08860555
TU63500 other downstream 1343707 8425821 ~ 8428012 (-) True G55814
TU60944 other downstream 4266471 5502395 ~ 5505248 (-) False G53515
TU60172 other downstream 5540250 4217420 ~ 4231469 (-) True G52828
TU59814 other downstream 6509762 3261203 ~ 3261957 (-) True CI01000009_03261739_03262843
TU67286 other upstream 2515709 12288217 ~ 12289518 (-) False G59097
TU67287 other upstream 2515709 12288217 ~ 12288977 (-) True G59097
TU67750 other upstream 4202880 13975388 ~ 13978614 (-) True CI01000009_13975122_13976026
TU67748 other upstream 4261056 14033564 ~ 14037873 (-) True G59490
TU68092 other upstream 5089889 14862397 ~ 14887464 (-) True G59811

Expression Profile