RNA id: TU65187


Basic Information

Item Value
RNA id TU65187
length 227
lncRNA type inter_gene
GC content 0.29
exon number 1
gene id G57210
representative True

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 9964330 ~ 9964556 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTTAATAATGTTTTCTCATTTCATGATTTATGATGACTTCTTTTAGGATTATTTCATCGAAAAGTAGGCAAAACCGGCTGAAGTCATTATAATCGAGGAAATGTTATTTTTGACTGAATTAAAATACCTCGGATTTGAAATTGTTCCCTATTTAAAATTACAAGCATAACTCATTATTTTAAAGTACACTCATTTATACCATAACAAATCCACTCTTGGGTTATGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65158 lncRNA downstream 48871 9915188 ~ 9915459 (-) True G57189
TU64909 lncRNA downstream 53849 9908800 ~ 9910481 (-) True CI01000009_09908895_09911939
TU64976 lncRNA downstream 88613 9873338 ~ 9875717 (-) True G57042
TU65147 lncRNA downstream 191822 9771719 ~ 9772508 (-) True G57180
TU65146 lncRNA downstream 195198 9766774 ~ 9769132 (-) True G57179
TU65196 lncRNA upstream 21517 9986073 ~ 9986491 (-) True G57219
TU65207 lncRNA upstream 36605 10001161 ~ 10003496 (-) True G57226
TU65209 lncRNA upstream 55525 10020081 ~ 10020301 (-) True G57228
TU65220 lncRNA upstream 82861 10047417 ~ 10134720 (-) True G57235
TU65218 lncRNA upstream 117562 10082118 ~ 10136770 (-) True G57234
CI01000009_09908895_09911939.mRNA mRNA downstream 52292 9908583 ~ 9912038 (-) False CI01000009_09908895_09911939
CI01000009_09900049_09906784.mRNA mRNA downstream 57546 9899709 ~ 9906784 (-) True CI01000009_09900049_09906784
CI01000009_09895304_09897877.mRNA mRNA downstream 66326 9895156 ~ 9898004 (-) True CI01000009_09895304_09897877
CI01000009_09884586_09891558.mRNA mRNA downstream 72772 9884580 ~ 9891558 (-) True CI01000009_09884586_09891558
CI01000009_09866875_09870401.mRNA mRNA downstream 93866 9866565 ~ 9870464 (-) True CI01000009_09866875_09870401
CI01000009_10089124_10102162.mRNA mRNA upstream 123381 10087937 ~ 10102162 (-) True CI01000009_10089124_10102162
CI01000009_10137314_10138474.mRNA mRNA upstream 172535 10137091 ~ 10139525 (-) True CI01000009_10137314_10138474
CI01000009_10149267_10242850.mRNA mRNA upstream 184711 10149267 ~ 10242850 (-) True CI01000009_10149267_10242850
CI01000009_10250936_10259244.mRNA mRNA upstream 286340 10250896 ~ 10259244 (-) True CI01000009_10250936_10259244
CI01000009_10261399_10263994.mRNA mRNA upstream 296044 10260600 ~ 10263994 (-) True CI01000009_10261399_10263994
TU64878 other downstream 1103767 8858152 ~ 8860563 (-) True CI01000009_08858198_08860555
TU63500 other downstream 1536318 8425821 ~ 8428012 (-) True G55814
TU60944 other downstream 4459082 5502395 ~ 5505248 (-) False G53515
TU60172 other downstream 5732861 4217420 ~ 4231469 (-) True G52828
TU59814 other downstream 6702373 3261203 ~ 3261957 (-) True CI01000009_03261739_03262843
TU67286 other upstream 2323661 12288217 ~ 12289518 (-) False G59097
TU67287 other upstream 2323661 12288217 ~ 12288977 (-) True G59097
TU67750 other upstream 4010832 13975388 ~ 13978614 (-) True CI01000009_13975122_13976026
TU67748 other upstream 4069008 14033564 ~ 14037873 (-) True G59490
TU68092 other upstream 4897841 14862397 ~ 14887464 (-) True G59811

Expression Profile