RNA id: TU65207


Basic Information

Item Value
RNA id TU65207
length 266
lncRNA type inter_gene
GC content 0.29
exon number 2
gene id G57226
representative True

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 10001161 ~ 10003496 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTTTGATATACTTTTACTAGTGGATGCAGGTCACTATAGTTCATTTATGTAAGTGAGGATAGCAAAATATAGTTAACTGTGACATATTATACCCAAAAATTCATACAGTGGACTACCAGTAAAATTGATAAAAATTTGCAACCAAAAATTATTCAGACACTTTGACCTGACCATGTTTTGCTTAAGTGTTATCGGACATAATTAAGATTATTTTTTTCTGACACAGTTTAACTCTGAGATCTTGTCATATTTTATTGCCATTTTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65196 lncRNA downstream 14670 9986073 ~ 9986491 (-) True G57219
TU65187 lncRNA downstream 36605 9964330 ~ 9964556 (-) True G57210
TU65158 lncRNA downstream 85702 9915188 ~ 9915459 (-) True G57189
TU64909 lncRNA downstream 90680 9908800 ~ 9910481 (-) True CI01000009_09908895_09911939
TU64976 lncRNA downstream 125444 9873338 ~ 9875717 (-) True G57042
TU65209 lncRNA upstream 16585 10020081 ~ 10020301 (-) True G57228
TU65220 lncRNA upstream 43921 10047417 ~ 10134720 (-) True G57235
TU65218 lncRNA upstream 78622 10082118 ~ 10136770 (-) True G57234
TU65233 lncRNA upstream 112294 10115790 ~ 10135432 (-) True G57247
TU65231 lncRNA upstream 139114 10142610 ~ 10144550 (-) True G57245
CI01000009_09908895_09911939.mRNA mRNA downstream 89123 9908583 ~ 9912038 (-) False CI01000009_09908895_09911939
CI01000009_09900049_09906784.mRNA mRNA downstream 94377 9899709 ~ 9906784 (-) True CI01000009_09900049_09906784
CI01000009_09895304_09897877.mRNA mRNA downstream 103157 9895156 ~ 9898004 (-) True CI01000009_09895304_09897877
CI01000009_09884586_09891558.mRNA mRNA downstream 109603 9884580 ~ 9891558 (-) True CI01000009_09884586_09891558
CI01000009_09866875_09870401.mRNA mRNA downstream 130697 9866565 ~ 9870464 (-) True CI01000009_09866875_09870401
CI01000009_10089124_10102162.mRNA mRNA upstream 84441 10087937 ~ 10102162 (-) True CI01000009_10089124_10102162
CI01000009_10137314_10138474.mRNA mRNA upstream 133595 10137091 ~ 10139525 (-) True CI01000009_10137314_10138474
CI01000009_10149267_10242850.mRNA mRNA upstream 145771 10149267 ~ 10242850 (-) True CI01000009_10149267_10242850
CI01000009_10250936_10259244.mRNA mRNA upstream 247400 10250896 ~ 10259244 (-) True CI01000009_10250936_10259244
CI01000009_10261399_10263994.mRNA mRNA upstream 257104 10260600 ~ 10263994 (-) True CI01000009_10261399_10263994
TU64878 other downstream 1140598 8858152 ~ 8860563 (-) True CI01000009_08858198_08860555
TU63500 other downstream 1573149 8425821 ~ 8428012 (-) True G55814
TU60944 other downstream 4495913 5502395 ~ 5505248 (-) False G53515
TU60172 other downstream 5769692 4217420 ~ 4231469 (-) True G52828
TU59814 other downstream 6739204 3261203 ~ 3261957 (-) True CI01000009_03261739_03262843
TU67286 other upstream 2284721 12288217 ~ 12289518 (-) False G59097
TU67287 other upstream 2284721 12288217 ~ 12288977 (-) True G59097
TU67750 other upstream 3971892 13975388 ~ 13978614 (-) True CI01000009_13975122_13976026
TU67748 other upstream 4030068 14033564 ~ 14037873 (-) True G59490
TU68092 other upstream 4858901 14862397 ~ 14887464 (-) True G59811

Expression Profile