Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU64214 |
| length | 1003 |
| lncRNA type | antisense_over |
| GC content | 0.46 |
| exon number | 2 |
| gene id | G56392 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000009 |
| NCBI id | null |
| chromosome length | 16003125 |
| location | 10258528 ~ 10259660 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU64166 | lncRNA | upstream | 123099 | 10052050 ~ 10135429 (+) | True | G56349 |
| TU64297 | lncRNA | upstream | 199996 | 10058274 ~ 10058532 (+) | True | G56456 |
| TU64275 | lncRNA | upstream | 238185 | 10020106 ~ 10020343 (+) | True | G56439 |
| TU64249 | lncRNA | upstream | 341355 | 9916869 ~ 9917173 (+) | True | G56417 |
| TU64207 | lncRNA | upstream | 344134 | 9908693 ~ 9914394 (+) | True | G56386 |
| TU64353 | lncRNA | downstream | 23413 | 10283073 ~ 10284524 (+) | True | G56507 |
| TU64356 | lncRNA | downstream | 29190 | 10288850 ~ 10289512 (+) | True | G56509 |
| TU64387 | lncRNA | downstream | 30799 | 10290459 ~ 10292559 (+) | False | G56540 |
| TU64388 | lncRNA | downstream | 32355 | 10292015 ~ 10292559 (+) | True | G56540 |
| TU64215 | lncRNA | downstream | 43822 | 10303482 ~ 10304485 (+) | True | G56393 |
| CI01000009_10103558_10119209.mRNA | mRNA | upstream | 139308 | 10103558 ~ 10119220 (+) | True | CI01000009_10103558_10119209 |
| CI01000009_09967529_09989449.mRNA | mRNA | upstream | 269061 | 9967384 ~ 9989467 (+) | True | CI01000009_09967529_09989449 |
| CI01000009_09952526_09962840.mRNA | mRNA | upstream | 294249 | 9952526 ~ 9964279 (+) | True | CI01000009_09952526_09962840 |
| CI01000009_09878612_09881564.mRNA | mRNA | upstream | 376634 | 9878612 ~ 9881894 (+) | True | CI01000009_09878612_09881564 |
| CI01000009_09866000_09866290.mRNA | mRNA | upstream | 392134 | 9865723 ~ 9866394 (+) | False | CI01000009_09866000_09866290 |
| CI01000009_10268535_10269640.mRNA | mRNA | downstream | 8875 | 10268535 ~ 10269784 (+) | True | CI01000009_10268535_10269640 |
| CI01000009_10319216_10329706.mRNA | mRNA | downstream | 59556 | 10319216 ~ 10329836 (+) | True | CI01000009_10319216_10329706 |
| CI01000009_10338738_10339712.mRNA | mRNA | downstream | 79078 | 10338738 ~ 10339774 (+) | True | CI01000009_10338738_10339712 |
| CI01000009_10341830_10347798.mRNA | mRNA | downstream | 82170 | 10341830 ~ 10348005 (+) | True | CI01000009_10341830_10347798 |
| CI01000009_10361969_10374788.mRNA | mRNA | downstream | 102309 | 10361969 ~ 10375458 (+) | True | CI01000009_10361969_10374788 |
| TU64139 | other | upstream | 401941 | 9853359 ~ 9853515 (+) | True | G56323 |
| TU63847 | other | upstream | 1128242 | 9129300 ~ 9130286 (+) | True | G56100 |
| TU61103 | other | upstream | 4010136 | 6245564 ~ 6248392 (+) | True | G53651 |
| TU61110 | other | upstream | 4325727 | 5860302 ~ 5860756 (+) | True | G53655 |
| TU60791 | other | upstream | 4719474 | 5535245 ~ 5538095 (+) | False | G53388 |
| TU65813 | other | downstream | 1501126 | 11760786 ~ 11760858 (+) | True | G57782 |
| TU65844 | other | downstream | 1674282 | 11933942 ~ 11935251 (+) | False | G57811 |
| TU65845 | other | downstream | 1674282 | 11933942 ~ 11935251 (+) | False | G57811 |
| TU65846 | other | downstream | 1674282 | 11933942 ~ 11935251 (+) | True | G57811 |
| TU65746 | other | downstream | 2172898 | 12432558 ~ 12433084 (+) | False | CI01000009_12432736_12435509 |
