RNA id: TU64356


Basic Information

Item Value
RNA id TU64356
length 462
lncRNA type antisense_over
GC content 0.56
exon number 3
gene id G56509
representative True

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 10288850 ~ 10289512 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TACCTTAGTGCAGTGCGGCACAAAGCCGTATATGAGAGTGTGACAGTCACTGAAGAGGGCGTGAAGCTGTGAGGGGGCTTGAACAGGAGGGGGCGCTGTGGGATTAAACTGCTGCCACTTCACTGCCACTGATCTGCAGCCTGGAGACTCCATACGCTGAACCTGAGCGCGCACCTTCTCTGCCCAAGTGTGTTTCATCTTGGTGTCAAAAAATTCATATGTTCCTCCACCTGCTTGAGCCAAAGCTCTGAGCATATGACGATTAGCTGTCAAGCTGAGTCCGCAGGTGAAGAGACGCGTGTGGCAGGAGTTTTCTCGGACCAGCTGTAGGGTCAGAGGCTGATTCTGAACATGTCCATCAGAGAGCAGCAGGATGTTCCTCACACCCCGGCAGGGAGGCAGCAGGCTCAGGCTCCGGAGAGGCCACCACAGCTCAGTGCCGCCACCAGCACCACTACAGGA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU64353 lncRNA upstream 4326 10283073 ~ 10284524 (+) True G56507
TU64214 lncRNA upstream 29190 10258528 ~ 10259660 (+) True G56392
TU64166 lncRNA upstream 153421 10052050 ~ 10135429 (+) True G56349
TU64297 lncRNA upstream 230318 10058274 ~ 10058532 (+) True G56456
TU64275 lncRNA upstream 268507 10020106 ~ 10020343 (+) True G56439
TU64387 lncRNA downstream 947 10290459 ~ 10292559 (+) False G56540
TU64388 lncRNA downstream 2503 10292015 ~ 10292559 (+) True G56540
TU64215 lncRNA downstream 13970 10303482 ~ 10304485 (+) True G56393
TU64423 lncRNA downstream 63417 10352929 ~ 10353684 (+) True G56564
TU64438 lncRNA downstream 222901 10512413 ~ 10512640 (+) True G56579
CI01000009_10268535_10269640.mRNA mRNA upstream 19066 10268535 ~ 10269784 (+) True CI01000009_10268535_10269640
CI01000009_10103558_10119209.mRNA mRNA upstream 169630 10103558 ~ 10119220 (+) True CI01000009_10103558_10119209
CI01000009_09967529_09989449.mRNA mRNA upstream 299383 9967384 ~ 9989467 (+) True CI01000009_09967529_09989449
CI01000009_09952526_09962840.mRNA mRNA upstream 324571 9952526 ~ 9964279 (+) True CI01000009_09952526_09962840
CI01000009_09878612_09881564.mRNA mRNA upstream 406956 9878612 ~ 9881894 (+) True CI01000009_09878612_09881564
CI01000009_10319216_10329706.mRNA mRNA downstream 29704 10319216 ~ 10329836 (+) True CI01000009_10319216_10329706
CI01000009_10338738_10339712.mRNA mRNA downstream 49226 10338738 ~ 10339774 (+) True CI01000009_10338738_10339712
CI01000009_10341830_10347798.mRNA mRNA downstream 52318 10341830 ~ 10348005 (+) True CI01000009_10341830_10347798
CI01000009_10361969_10374788.mRNA mRNA downstream 72457 10361969 ~ 10375458 (+) True CI01000009_10361969_10374788
CI01000009_10376105_10382009.mRNA mRNA downstream 86593 10376105 ~ 10382284 (+) True CI01000009_10376105_10382009
TU64139 other upstream 432263 9853359 ~ 9853515 (+) True G56323
TU63847 other upstream 1158564 9129300 ~ 9130286 (+) True G56100
TU61103 other upstream 4040458 6245564 ~ 6248392 (+) True G53651
TU61110 other upstream 4356049 5860302 ~ 5860756 (+) True G53655
TU60791 other upstream 4749796 5535245 ~ 5538095 (+) False G53388
TU65813 other downstream 1471274 11760786 ~ 11760858 (+) True G57782
TU65844 other downstream 1644430 11933942 ~ 11935251 (+) False G57811
TU65845 other downstream 1644430 11933942 ~ 11935251 (+) False G57811
TU65846 other downstream 1644430 11933942 ~ 11935251 (+) True G57811
TU65746 other downstream 2143046 12432558 ~ 12433084 (+) False CI01000009_12432736_12435509

Expression Profile