RNA id: TU64388


Basic Information

Item Value
RNA id TU64388
length 380
lncRNA type antisense_over
GC content 0.49
exon number 3
gene id G56540
representative True

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 10290459 ~ 10292559 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CCTGAGTCGTCTGATTAAGGGCGGCGCTCTGTTGCCATGGTGCCACGCTGCCAGCCAATGAGAAGACTATAGAGCCTGATCTCACCACCAGCTCAGTGATGAACGTCACCTTGATCAAAACTGTGGCTCCGGGAGGAAGGTTCCCCACGCTGATAGTAAATACATCCGGTGCATCCTGGTCCATCAGGTAGGCTCCATGGCCTTTCTCTATGGCTTGCTTGTACTCCTTACGAGCCTGTTCTTTTTCCTTTACCTTTCCAATGACGTGTTTTCCATTGATAAAGGCTTCAAATCCACACACTGCTGCCGTCTCCTCCAGTGGAAAGACGTACTTTGCTTCAATAGGAACAGCACTGTTGTTTGTGTAGGTCTGAAAAATG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU64356 lncRNA upstream 2503 10288850 ~ 10289512 (+) True G56509
TU64353 lncRNA upstream 7491 10283073 ~ 10284524 (+) True G56507
TU64214 lncRNA upstream 32355 10258528 ~ 10259660 (+) True G56392
TU64166 lncRNA upstream 156586 10052050 ~ 10135429 (+) True G56349
TU64215 lncRNA downstream 10923 10303482 ~ 10304485 (+) True G56393
TU64423 lncRNA downstream 60370 10352929 ~ 10353684 (+) True G56564
TU64438 lncRNA downstream 219854 10512413 ~ 10512640 (+) True G56579
TU64426 lncRNA downstream 226257 10518816 ~ 10533725 (+) True G56567
TU64399 lncRNA downstream 338539 10631098 ~ 10638452 (+) False G56548
CI01000009_10268535_10269640.mRNA mRNA upstream 22231 10268535 ~ 10269784 (+) True CI01000009_10268535_10269640
CI01000009_10103558_10119209.mRNA mRNA upstream 172795 10103558 ~ 10119220 (+) True CI01000009_10103558_10119209
CI01000009_09967529_09989449.mRNA mRNA upstream 302548 9967384 ~ 9989467 (+) True CI01000009_09967529_09989449
CI01000009_09952526_09962840.mRNA mRNA upstream 327736 9952526 ~ 9964279 (+) True CI01000009_09952526_09962840
CI01000009_09878612_09881564.mRNA mRNA upstream 410121 9878612 ~ 9881894 (+) True CI01000009_09878612_09881564
CI01000009_10319216_10329706.mRNA mRNA downstream 26657 10319216 ~ 10329836 (+) True CI01000009_10319216_10329706
CI01000009_10338738_10339712.mRNA mRNA downstream 46179 10338738 ~ 10339774 (+) True CI01000009_10338738_10339712
CI01000009_10341830_10347798.mRNA mRNA downstream 49271 10341830 ~ 10348005 (+) True CI01000009_10341830_10347798
CI01000009_10361969_10374788.mRNA mRNA downstream 69410 10361969 ~ 10375458 (+) True CI01000009_10361969_10374788
CI01000009_10376105_10382009.mRNA mRNA downstream 83546 10376105 ~ 10382284 (+) True CI01000009_10376105_10382009
TU64139 other upstream 435428 9853359 ~ 9853515 (+) True G56323
TU63847 other upstream 1161729 9129300 ~ 9130286 (+) True G56100
TU61103 other upstream 4043623 6245564 ~ 6248392 (+) True G53651
TU61110 other upstream 4359214 5860302 ~ 5860756 (+) True G53655
TU60791 other upstream 4752961 5535245 ~ 5538095 (+) False G53388
TU65813 other downstream 1468227 11760786 ~ 11760858 (+) True G57782
TU65844 other downstream 1641383 11933942 ~ 11935251 (+) False G57811
TU65845 other downstream 1641383 11933942 ~ 11935251 (+) False G57811
TU65846 other downstream 1641383 11933942 ~ 11935251 (+) True G57811
TU65746 other downstream 2139999 12432558 ~ 12433084 (+) False CI01000009_12432736_12435509

Expression Profile