RNA id: TU64589


Basic Information

Item Value
RNA id TU64589
length 453
lncRNA type read_through
GC content 0.45
exon number 2
gene id G56725
representative True

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 10886439 ~ 10926871 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGAGAGTTCGGAGAACACTCCACAACTTCACAAAGGCCTCGACCAGTGATTTTCAGCAGGCATCAATGTATTAAAGTCGATATCAAAGAAAACGACAAACCGTCTTTAACAAAGATAAAAATTTTAGGCTCAATGCACAAAAGATAAGCAAGACAGGGAATGAAGAAAAAATGAACACACAAGTCATGTGACTTGTAAGCTCATATTGTACCTGTGAGGTTCTTAAGGCCAAGCTGACGGAGACCAAAGTTGCCGTCTCTGCGGTAGTTGAGGAAGATAGCCAAGCCATAGCGGTCTTCATACAGCCTGGTGCCGCGGATGATGCGAAGATTCTCCAGAGGCAGATATTCAAACTGATTTAGCGCCACAAGCACATAGCCGGTCACCTCACGAATGGACCTAAGAAATGACAGGTCACGACTGCGATCGATGCTGGTGATCTCGAGGTTACCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU64556 lncRNA upstream 26285 10830992 ~ 10860154 (+) True G56695
TU64492 lncRNA upstream 164103 10721894 ~ 10722336 (+) True G56633
TU64487 lncRNA upstream 170551 10715610 ~ 10715888 (+) True G56628
TU64453 lncRNA upstream 190426 10695726 ~ 10696013 (+) True G56594
TU64399 lncRNA upstream 247987 10631098 ~ 10638452 (+) False G56548
TU64663 lncRNA downstream 58373 10985244 ~ 11256970 (+) False G56784
TU64725 lncRNA downstream 184366 11111237 ~ 11114663 (+) True G56843
TU64662 lncRNA downstream 233125 11159996 ~ 11256970 (+) False G56784
TU64650 lncRNA downstream 284415 11211286 ~ 11256970 (+) False G56784
TU64652 lncRNA downstream 286054 11212925 ~ 11256970 (+) False G56784
CI01000009_10644080_10691030.mRNA mRNA upstream 194389 10644080 ~ 10692050 (+) True CI01000009_10644080_10691030
CI01000009_10583435_10617169.mRNA mRNA upstream 269270 10583435 ~ 10617169 (+) True CI01000009_10583435_10617169
CI01000009_10555555_10560050.mRNA mRNA upstream 326041 10554350 ~ 10560398 (+) True CI01000009_10555555_10560050
CI01000009_10491868_10508777.mRNA mRNA upstream 377430 10491401 ~ 10509009 (+) True CI01000009_10491868_10508777
CI01000009_10477699_10485965.mRNA mRNA upstream 399086 10476658 ~ 10487353 (+) True CI01000009_10477699_10485965
CI01000009_11342784_11347580.mRNA mRNA downstream 415913 11342784 ~ 11348827 (+) True CI01000009_11342784_11347580
CI01000009_11434018_11455253.mRNA mRNA downstream 506921 11433792 ~ 11455635 (+) True CI01000009_11434018_11455253
CI01000009_11493236_11526914.mRNA mRNA downstream 566365 11493236 ~ 11526914 (+) True CI01000009_11493236_11526914
CI01000009_11669960_11702667.mRNA mRNA downstream 743089 11669960 ~ 11703539 (+) True CI01000009_11669960_11702667
CI01000009_11711277_11714191.mRNA mRNA downstream 784289 11711160 ~ 11714694 (+) True CI01000009_11711277_11714191
TU64139 other upstream 1029852 9853359 ~ 9853515 (+) True G56323
TU63847 other upstream 1756153 9129300 ~ 9130286 (+) True G56100
TU61103 other upstream 4638047 6245564 ~ 6248392 (+) True G53651
TU61110 other upstream 4953638 5860302 ~ 5860756 (+) True G53655
TU60791 other upstream 5347385 5535245 ~ 5538095 (+) False G53388
TU65813 other downstream 833915 11760786 ~ 11760858 (+) True G57782
TU65844 other downstream 1007071 11933942 ~ 11935251 (+) False G57811
TU65845 other downstream 1007071 11933942 ~ 11935251 (+) False G57811
TU65846 other downstream 1007071 11933942 ~ 11935251 (+) True G57811
TU65746 other downstream 1505687 12432558 ~ 12433084 (+) False CI01000009_12432736_12435509

Expression Profile