RNA id: TU64608


Basic Information

Item Value
RNA id TU64608
length 238
lncRNA type antisense_over
GC content 0.49
exon number 2
gene id G56744
representative True

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 10919860 ~ 10932759 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTGAATGTGAACCTGTGGTGACATTCGCCGTAGGCAGGAGAAGTGAGGAGACACTGGAGCGGGCCATGAGCCGAGAAACAGGTCTCAAAATGTGAAGACAAAGTACTGGAGTTCACAGTGTTCTCAGTTGAATGGGCTGTGCTGACCAAGGTCCATGCCTTATTACCCATAATCCCATAGGCCATCTCATTGACACCAGGCAGAGAAAAAGACATACCTCTGGGAGAGAAGAATGTAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU64556 lncRNA upstream 59706 10830992 ~ 10860154 (+) True G56695
TU64492 lncRNA upstream 197524 10721894 ~ 10722336 (+) True G56633
TU64487 lncRNA upstream 203972 10715610 ~ 10715888 (+) True G56628
TU64453 lncRNA upstream 223847 10695726 ~ 10696013 (+) True G56594
TU64402 lncRNA upstream 285113 10633381 ~ 10634747 (+) True G56548
TU64663 lncRNA downstream 52485 10985244 ~ 11256970 (+) False G56784
TU64725 lncRNA downstream 178478 11111237 ~ 11114663 (+) True G56843
TU64662 lncRNA downstream 227237 11159996 ~ 11256970 (+) False G56784
TU64650 lncRNA downstream 278527 11211286 ~ 11256970 (+) False G56784
TU64652 lncRNA downstream 280166 11212925 ~ 11256970 (+) False G56784
CI01000009_10644080_10691030.mRNA mRNA upstream 227810 10644080 ~ 10692050 (+) True CI01000009_10644080_10691030
CI01000009_10583435_10617169.mRNA mRNA upstream 302691 10583435 ~ 10617169 (+) True CI01000009_10583435_10617169
CI01000009_10555555_10560050.mRNA mRNA upstream 359462 10554350 ~ 10560398 (+) True CI01000009_10555555_10560050
CI01000009_10491868_10508777.mRNA mRNA upstream 410851 10491401 ~ 10509009 (+) True CI01000009_10491868_10508777
CI01000009_10477699_10485965.mRNA mRNA upstream 432507 10476658 ~ 10487353 (+) True CI01000009_10477699_10485965
CI01000009_11342784_11347580.mRNA mRNA downstream 410025 11342784 ~ 11348827 (+) True CI01000009_11342784_11347580
CI01000009_11434018_11455253.mRNA mRNA downstream 501033 11433792 ~ 11455635 (+) True CI01000009_11434018_11455253
CI01000009_11493236_11526914.mRNA mRNA downstream 560477 11493236 ~ 11526914 (+) True CI01000009_11493236_11526914
CI01000009_11669960_11702667.mRNA mRNA downstream 737201 11669960 ~ 11703539 (+) True CI01000009_11669960_11702667
CI01000009_11711277_11714191.mRNA mRNA downstream 778401 11711160 ~ 11714694 (+) True CI01000009_11711277_11714191
TU64139 other upstream 1063273 9853359 ~ 9853515 (+) True G56323
TU63847 other upstream 1789574 9129300 ~ 9130286 (+) True G56100
TU61103 other upstream 4671468 6245564 ~ 6248392 (+) True G53651
TU61110 other upstream 4987059 5860302 ~ 5860756 (+) True G53655
TU60791 other upstream 5380806 5535245 ~ 5538095 (+) False G53388
TU65813 other downstream 828027 11760786 ~ 11760858 (+) True G57782
TU65844 other downstream 1001183 11933942 ~ 11935251 (+) False G57811
TU65845 other downstream 1001183 11933942 ~ 11935251 (+) False G57811
TU65846 other downstream 1001183 11933942 ~ 11935251 (+) True G57811
TU65746 other downstream 1499799 12432558 ~ 12433084 (+) False CI01000009_12432736_12435509

Expression Profile