RNA id: TU65568


Basic Information

Item Value
RNA id TU65568
length 269
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G57550
representative True

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 11362279 ~ 11362547 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GCTTCTTGTTAGTGTATATTCTTTGCCACTATCAACGCCTAAATGAATCAACAGCGGTCAGGTGGTACAGCGGCCACGTGATACATGTGGGAGTTTTCAGAAAACTCCCAGCTTACAAGCTGTAATTACGAGCTCTACGAGGACGTGAACACTTTTTACGAGCCAGAATCTCGTAGTTACAGGAATTATGATATGGCGTGAACGCACCTTTAGCTCCTCAGTATTCTCAGTAGCTGTCGCATTTCTCAGGAGCTAATTACCCTCCTCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65550 lncRNA downstream 46634 11315408 ~ 11315645 (-) True G57533
TU65544 lncRNA downstream 67407 11294636 ~ 11294872 (-) True G57527
TU65462 lncRNA downstream 105308 11195849 ~ 11256971 (-) False G57456
TU65583 lncRNA upstream 23798 11386345 ~ 11386611 (-) True G57565
TU65586 lncRNA upstream 34356 11396903 ~ 11397293 (-) True G57568
TU65598 lncRNA upstream 60159 11422706 ~ 11423118 (-) True G57580
TU65599 lncRNA upstream 60853 11423400 ~ 11423652 (-) True G57581
TU67006 lncRNA upstream 101514 11464061 ~ 11464387 (-) True G58854
CI01000009_11255397_11267304.mRNA mRNA downstream 94975 11255397 ~ 11267304 (-) True CI01000009_11255397_11267304
CI01000009_11237437_11237793.mRNA mRNA downstream 124486 11236603 ~ 11237793 (-) True CI01000009_11237437_11237793
CI01000009_11129491_11164618.mRNA mRNA downstream 197452 11129369 ~ 11164827 (-) True CI01000009_11129491_11164618
CI01000009_11116286_11120640.mRNA mRNA downstream 241631 11116286 ~ 11120648 (-) True CI01000009_11116286_11120640
CI01000009_11102518_11109578.mRNA mRNA downstream 252701 11102121 ~ 11109578 (-) True CI01000009_11102518_11109578
CI01000009_11491188_11491908.mRNA mRNA upstream 128388 11490935 ~ 11492001 (-) True CI01000009_11491188_11491908
CI01000009_11538058_11566095.mRNA mRNA upstream 175511 11538058 ~ 11566095 (-) True CI01000009_11538058_11566095
CI01000009_11573561_11616345.mRNA mRNA upstream 210901 11573448 ~ 11616345 (-) True CI01000009_11573561_11616345
CI01000009_11660386_11668299.mRNA mRNA upstream 297103 11659650 ~ 11668299 (-) True CI01000009_11660386_11668299
CI01000009_11707091_11707360.mRNA mRNA upstream 342465 11705012 ~ 11707589 (-) False CI01000009_11707091_11707360
TU64878 other downstream 2501716 8858152 ~ 8860563 (-) True CI01000009_08858198_08860555
TU63500 other downstream 2934267 8425821 ~ 8428012 (-) True G55814
TU60944 other downstream 5857031 5502395 ~ 5505248 (-) False G53515
TU60172 other downstream 7130810 4217420 ~ 4231469 (-) True G52828
TU59814 other downstream 8100322 3261203 ~ 3261957 (-) True CI01000009_03261739_03262843
TU67286 other upstream 925670 12288217 ~ 12289518 (-) False G59097
TU67287 other upstream 925670 12288217 ~ 12288977 (-) True G59097
TU67750 other upstream 2612841 13975388 ~ 13978614 (-) True CI01000009_13975122_13976026
TU67748 other upstream 2671017 14033564 ~ 14037873 (-) True G59490
TU68092 other upstream 3499850 14862397 ~ 14887464 (-) True G59811

Expression Profile