RNA id: TU65598


Basic Information

Item Value
RNA id TU65598
length 413
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G57580
representative True

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 11422706 ~ 11423118 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATCATTTATAGCCTTTTCTCACAGCAGCTGCAATAATTAAACTTATCATTTGGATGGCGGATTATATGGTATGACAAATTAACATTAGAGATTAGACTGTACAGAAATTGAAATCTACAGGTAACGCTAATACACATTAAATACACAGTCACGCAATGCTGATGTTGTTAACATTAACAATTTGAGAACAAAGTATAACAATAATAATAATTTGCACGGTTTGACATGATCCGAGCTAAGCGATTGTTAAATTTAATCACCAATGGCTGCGCGATTTACTGTAATGCTTTTTTTCCCCCCTCAGTTGGTCAGTACAAAAGTGGCAGACATGTTAATTACTTGTTCAGATGACATTTTTTGGTGAAAATTCTTATTTTGGTCATACTTCAAGACTACAATCTGTGATTCCTAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65586 lncRNA downstream 25413 11396903 ~ 11397293 (-) True G57568
TU65583 lncRNA downstream 36095 11386345 ~ 11386611 (-) True G57565
TU65568 lncRNA downstream 60159 11362279 ~ 11362547 (-) True G57550
TU65550 lncRNA downstream 107061 11315408 ~ 11315645 (-) True G57533
TU65544 lncRNA downstream 127834 11294636 ~ 11294872 (-) True G57527
TU65599 lncRNA upstream 282 11423400 ~ 11423652 (-) True G57581
TU67006 lncRNA upstream 40943 11464061 ~ 11464387 (-) True G58854
TU67009 lncRNA upstream 44249 11467367 ~ 11467573 (-) True G58857
TU67086 lncRNA upstream 88683 11511801 ~ 11512029 (-) True G58923
TU67087 lncRNA upstream 89091 11512209 ~ 11512681 (-) True G58924
CI01000009_11255397_11267304.mRNA mRNA downstream 155402 11255397 ~ 11267304 (-) True CI01000009_11255397_11267304
CI01000009_11237437_11237793.mRNA mRNA downstream 184913 11236603 ~ 11237793 (-) True CI01000009_11237437_11237793
CI01000009_11129491_11164618.mRNA mRNA downstream 257879 11129369 ~ 11164827 (-) True CI01000009_11129491_11164618
CI01000009_11116286_11120640.mRNA mRNA downstream 302058 11116286 ~ 11120648 (-) True CI01000009_11116286_11120640
CI01000009_11102518_11109578.mRNA mRNA downstream 313128 11102121 ~ 11109578 (-) True CI01000009_11102518_11109578
CI01000009_11491188_11491908.mRNA mRNA upstream 67817 11490935 ~ 11492001 (-) True CI01000009_11491188_11491908
CI01000009_11538058_11566095.mRNA mRNA upstream 114940 11538058 ~ 11566095 (-) True CI01000009_11538058_11566095
CI01000009_11573561_11616345.mRNA mRNA upstream 150330 11573448 ~ 11616345 (-) True CI01000009_11573561_11616345
CI01000009_11660386_11668299.mRNA mRNA upstream 236532 11659650 ~ 11668299 (-) True CI01000009_11660386_11668299
CI01000009_11707091_11707360.mRNA mRNA upstream 281894 11705012 ~ 11707589 (-) False CI01000009_11707091_11707360
TU64878 other downstream 2562143 8858152 ~ 8860563 (-) True CI01000009_08858198_08860555
TU63500 other downstream 2994694 8425821 ~ 8428012 (-) True G55814
TU60944 other downstream 5917458 5502395 ~ 5505248 (-) False G53515
TU60172 other downstream 7191237 4217420 ~ 4231469 (-) True G52828
TU59814 other downstream 8160749 3261203 ~ 3261957 (-) True CI01000009_03261739_03262843
TU67286 other upstream 865099 12288217 ~ 12289518 (-) False G59097
TU67287 other upstream 865099 12288217 ~ 12288977 (-) True G59097
TU67750 other upstream 2552270 13975388 ~ 13978614 (-) True CI01000009_13975122_13976026
TU67748 other upstream 2610446 14033564 ~ 14037873 (-) True G59490
TU68092 other upstream 3439279 14862397 ~ 14887464 (-) True G59811

Expression Profile