RNA id: TU65634


Basic Information

Item Value
RNA id TU65634
length 210
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G57616
representative True

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 11464649 ~ 11464858 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CGGTTTCACAGACAAGGCTTAAGCTAGTCCTAGACTAAAATGCATGTTTGAGCTGTTTTAACTGAAAACAACTTGCACTGACATATCTTAAAATATGTCAGAACCATTGTTTTGTCTCAAAATGCACACCAGTAATGTTTTTTTTTTTTTTTCTAGGGCACGTTTATAAAAGCTACTTAAATGCCCTAAATGAAATAAGGTCTAATCCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65633 lncRNA upstream 429 11463925 ~ 11464220 (+) True G57615
TU65607 lncRNA upstream 33012 11431344 ~ 11431637 (+) True G57589
TU65585 lncRNA upstream 67310 11397003 ~ 11397339 (+) True G57567
TU65582 lncRNA upstream 78066 11386354 ~ 11386583 (+) True G57564
TU65575 lncRNA upstream 92881 11371395 ~ 11371768 (+) True G57557
TU65636 lncRNA downstream 2407 11467265 ~ 11467524 (+) True G57618
TU65644 lncRNA downstream 48044 11512902 ~ 11513204 (+) True G57626
TU65624 lncRNA downstream 65939 11530797 ~ 11532780 (+) True G57606
TU65672 lncRNA downstream 155602 11620460 ~ 11655364 (+) True G57654
TU65693 lncRNA downstream 199164 11664022 ~ 11666325 (+) True G57665
CI01000009_11434018_11455253.mRNA mRNA upstream 9014 11433792 ~ 11455635 (+) True CI01000009_11434018_11455253
CI01000009_11342784_11347580.mRNA mRNA upstream 115822 11342784 ~ 11348827 (+) True CI01000009_11342784_11347580
CI01000009_10644080_10691030.mRNA mRNA upstream 772599 10644080 ~ 10692050 (+) True CI01000009_10644080_10691030
CI01000009_10583435_10617169.mRNA mRNA upstream 847480 10583435 ~ 10617169 (+) True CI01000009_10583435_10617169
CI01000009_10555555_10560050.mRNA mRNA upstream 904251 10554350 ~ 10560398 (+) True CI01000009_10555555_10560050
CI01000009_11493236_11526914.mRNA mRNA downstream 28378 11493236 ~ 11526914 (+) True CI01000009_11493236_11526914
CI01000009_11669960_11702667.mRNA mRNA downstream 205102 11669960 ~ 11703539 (+) True CI01000009_11669960_11702667
CI01000009_11711277_11714191.mRNA mRNA downstream 246302 11711160 ~ 11714694 (+) True CI01000009_11711277_11714191
CI01000009_11761868_11765848.mRNA mRNA downstream 296748 11761606 ~ 11766331 (+) False CI01000009_11761868_11765848
CI01000009_11769442_11773619.mRNA mRNA downstream 304584 11769442 ~ 11773619 (+) True CI01000009_11769442_11773619
TU64139 other upstream 1608062 9853359 ~ 9853515 (+) True G56323
TU63847 other upstream 2334363 9129300 ~ 9130286 (+) True G56100
TU61103 other upstream 5216257 6245564 ~ 6248392 (+) True G53651
TU61110 other upstream 5531848 5860302 ~ 5860756 (+) True G53655
TU60791 other upstream 5925595 5535245 ~ 5538095 (+) False G53388
TU65813 other downstream 295928 11760786 ~ 11760858 (+) True G57782
TU65844 other downstream 469084 11933942 ~ 11935251 (+) False G57811
TU65845 other downstream 469084 11933942 ~ 11935251 (+) False G57811
TU65846 other downstream 469084 11933942 ~ 11935251 (+) True G57811
TU65746 other downstream 967700 12432558 ~ 12433084 (+) False CI01000009_12432736_12435509

Expression Profile